| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 940,880 – 940,991 |
| Length | 111 |
| Max. P | 0.962425 |
| Location | 940,880 – 940,991 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 74.96 |
| Mean single sequence MFE | -23.45 |
| Consensus MFE | -10.06 |
| Energy contribution | -11.09 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.43 |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.962425 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 940880 111 - 1281640 GACGAGACUGAAAUAUCCGCAAUGGCAU------UACAAGAUGUGAAUAGUUUGGAUAAUAACCAAAUUGAAAAAACAUACCCUUCAAAGCCGAAACUCAAUGUAGAUGUUUCAGAA .......((((((((((..((..(((.(------(((.....)))).((((((((.......))))))))...................)))(.....)..))..)))))))))).. ( -27.40) >DroSec_CAF1 5381 111 - 1 GAUGAAACUGAAAUAUCCGCAAUGGCAU------UAAAAGAUGUGAAUAGUUUGGAUAAUCACCAAACUGAAAAAACAUACCCUACAAAGCCAAAACUCAAUGUAGAUGUUUCAGAA .......((((((((((..((.((((((------(....)))))...((((((((.......))))))))............................)).))..)))))))))).. ( -27.90) >DroSim_CAF1 5859 111 - 1 GAUGAAACUGAAAUAUCCGCAAUGGCAU------UAAAAGAUGUGAAUAGUUUGGAUAAUCACCAAACUGAAAAAACAUACCCUACAAAGCCAAAACUCAAUGUAGAUGUUUCAGAA .......((((((((((..((.((((((------(....)))))...((((((((.......))))))))............................)).))..)))))))))).. ( -27.90) >DroEre_CAF1 8758 117 - 1 GAUGAGACUGAUAUAUCCUCUAUGGCAUCCUCUAUUCAGGAAGUGAAUAGUUUGGAUAAUCGCCAAACUGAAACAACAUACCCUAUAAAGUCGAAACAAAAUGUCGAUGUUUUAAAA .....((((..((((((((..((((......))))..)))).((...((((((((.......))))))))..)).........)))).))))((((((.........)))))).... ( -22.40) >DroYak_CAF1 5449 105 - 1 GAUGAGACUGAAAUAUCCUCUAUGGCAU------UAAAAGAAGUAAAUAGUUUGGAUAAUCGCCAAACUCAAGCAGCAUACCCUAUAAAGCCAAAACACAA------UGUUUCAGAA .......(((((((((......((((..------........((....(((((((.......)))))))...))((......)).....)))).......)------)))))))).. ( -20.02) >DroPer_CAF1 11734 105 - 1 GAUGAGACUGAUGAAGCGCCGAUGGCAU------UAGCAGAAGAGAUUUGUGGCGAGACCCGACCAUCCAAAACAGUAGAAGAAAUAACGACUAAAGAACU------UUUAUCAAAA ((((((((((...((..(((...))).)------)..)))....(.(((((((((.....)).)))..)))).)..........................)------)))))).... ( -15.10) >consensus GAUGAGACUGAAAUAUCCGCAAUGGCAU______UAAAAGAAGUGAAUAGUUUGGAUAAUCACCAAACUGAAAAAACAUACCCUACAAAGCCAAAACACAAUGUAGAUGUUUCAGAA .......((((((((((.......((................))...((((((((.......))))))))...................................)))))))))).. (-10.06 = -11.09 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:28 2006