Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 172,876 – 172,976 |
Length | 100 |
Max. P | 0.655011 |
Location | 172,876 – 172,976 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 79.02 |
Mean single sequence MFE | -20.15 |
Consensus MFE | -15.27 |
Energy contribution | -14.90 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.23 |
Mean z-score | -1.56 |
Structure conservation index | 0.76 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.655011 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 172876 100 - 1281640 AAAUAU-----AUUUGCUUCAGAUGUUUCUGGAAGACUACUUGUCUUCGAUUUUUUAAUGUGUCUUGAAUGAUUUUUUCGAGCAGAUUUUGCUUGUUGUAUUUCU ((((((-----(...((..((((....))))((((((.....))))))........(((.((.((((((.......)))))))).)))..))....))))))).. ( -22.60) >DroSec_CAF1 12171 100 - 1 AAAGAU-----AUUUGCUUCAGAUUUUUCUGGAAGACUACUUGUCUUCGAUUUUUGAACGAAUCCUGCAUGAUUUUGCCGAGCAGAGUUUGCUUGUUGUAUUUCU ((((((-----........((((....))))((((((.....)))))).))))))..((((.....(((.((((((((...)))))))))))...))))...... ( -23.10) >DroEre_CAF1 9065 105 - 1 ACAUCUGGUGAUUUUGUUUCAGAUUUUUCUGGAAGGAUAUUUGUCUUUGAUUUUUUAACGAAUCUUGAAUGAUUUUGCUGAGCAGAUUUAGAUUGUUGUAUUUGA .((...((..(..((.(((((((....))))))).))...)..))..))......((((.(((((.....((.(((((...))))).)))))))))))....... ( -17.30) >DroYak_CAF1 13870 93 - 1 ------------UUUGCUUCAGUUUUUUCUGGAAGGCUAUUUGUCUUUAAUUUUUUAACAAGUCUUGACUGAUUUUGCUGAGCAGAUUUAGGUUCUUGUAUUUGA ------------.......(((......)))((((((.....)))))).........(((((......((((.(((((...))))).))))...)))))...... ( -17.60) >consensus AAAUAU_____AUUUGCUUCAGAUUUUUCUGGAAGACUACUUGUCUUCGAUUUUUUAACGAAUCUUGAAUGAUUUUGCCGAGCAGAUUUAGCUUGUUGUAUUUCA ............(((((((((((....))))((((((.....))))))...........(((((......)))))....)))))))................... (-15.27 = -14.90 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:14 2006