Locus 138

Sequence ID 4_DroMel_CAF1
Location 917,178 – 917,272
Length 94
Max. P 0.975333
window219

overview

Window 9

Location 917,178 – 917,272
Length 94
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 83.17
Mean single sequence MFE -20.28
Consensus MFE -14.19
Energy contribution -14.97
Covariance contribution 0.78
Combinations/Pair 1.06
Mean z-score -3.07
Structure conservation index 0.70
SVM decision value 1.75
SVM RNA-class probability 0.975333
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 917178 94 + 1281640
UAAUGCGGGAAAAAACAUUUAUAUUUCC-CAUUCAAGUAUUU-GUUGCCCGCAUUU-------AAAACAAUUUUACCCUCUAAAACAAAC-GUAGUUGAUUACG
.((((((((....((((...((((((..-.....)))))).)-))).)))))))).-------..........................(-((((....))))) ( -18.20)
>DroSec_CAF1 27335 95 + 1
AAAUGCGGGCAAAAACAUUUAUAUUUCC-CAUUCAAGUAUUU-GUUGCCCGCAUUU-------AAAACAAUUUUACCCCUUAAAACAAACCAUAGCUGAUUACG
(((((((((((...(((...((((((..-.....)))))).)-)))))))))))))-------......................................... ( -20.00)
>DroEre_CAF1 31660 104 + 1
CAAUGCGGGCAAAAACAUUUACGUUUCCACCUUCAACUAUUCGGUUGCCCGCAUUUAAGUAUUAAAACAAGAUUAGCCCUCAAAACAAACCAUAGCUGAUUACG
.((((((((((.((((......))))..(((...........)))))))))))))...............(((((((.................)))))))... ( -22.63)
>consensus
AAAUGCGGGCAAAAACAUUUAUAUUUCC_CAUUCAAGUAUUU_GUUGCCCGCAUUU_______AAAACAAUUUUACCCCUUAAAACAAACCAUAGCUGAUUACG
.(((((((((((........((((((........))))))....)))))))))))................................................. (-14.19 = -14.97 +   0.78) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:24 2006