Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 912,817 – 912,932 |
Length | 115 |
Max. P | 0.559611 |
Location | 912,817 – 912,932 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 91.16 |
Mean single sequence MFE | -27.50 |
Consensus MFE | -20.23 |
Energy contribution | -20.35 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -1.77 |
Structure conservation index | 0.74 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559611 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 912817 115 - 1281640 CUCAAAAGCCAGAUUAAAAUAAAGGAGCAGUUACGACUUCAGCAACAAUCAACGAUUUAUGCGUCGUCACUAUUGAGCUCUUCUGCUGCCGGAUCAGUAAGAGCUCCGCUCUUAA ......................(((((((((.(((((....(((..((((...))))..)))))))).)))...(((((((..(((((......)))))))))))).)))))).. ( -32.30) >DroSec_CAF1 24759 115 - 1 CUCAAAAGCCAGAUUAAAAUAAAGGAGCAGUUACGACUUCAGCAACAAUCAACGAUUUAUGCGUCGUCACUAUUGAGCUCUUCUGCUGCCGGAUCAGUAAAAGCUCCGCUCUCAA .......................((((((((.(((((....(((..((((...))))..)))))))).)))...(((((....(((((......)))))..))))).)))))... ( -26.00) >DroEre_CAF1 28367 115 - 1 CUCAAAAGCCAGAUUGAAAUAAAGGAGCAGUUACGACUUCAGCAACAAUCAACAAUGUAUGCGUCGUCACUAUUAAGUACUUCUGCUGGUGGAUCAGUAAGAGAACCGCUCUUAA .((((........)))).....(((((((((.(((((....((((((........))).)))))))).))).....((.((..((((((....))))))..)).)).)))))).. ( -27.60) >DroYak_CAF1 25264 115 - 1 CUAAAAAGCCAGAUUAAAAUAAAGGAGCAGUUACGGCUUCAGCAACAAUCAACGAUGUAUGCGUCGUCACUAUUUAACUCUUCUUCUGGUAGAUUAGUAAAAGCACCGCUCUUAA ((((...((((((.........(((((.(((((..((....))........((((((....)))))).......))))))))))))))))...))))(((.(((...))).))). ( -24.10) >consensus CUCAAAAGCCAGAUUAAAAUAAAGGAGCAGUUACGACUUCAGCAACAAUCAACGAUGUAUGCGUCGUCACUAUUGAGCUCUUCUGCUGCCGGAUCAGUAAAAGCACCGCUCUUAA ......................(((((((((.(((((....(((...(((...)))...)))))))).)))........(((.(((((......))))).)))....)))))).. (-20.23 = -20.35 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:20 2006