Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 912,119 – 912,239 |
Length | 120 |
Max. P | 0.745282 |
Location | 912,119 – 912,239 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.28 |
Mean single sequence MFE | -28.90 |
Consensus MFE | -21.23 |
Energy contribution | -23.73 |
Covariance contribution | 2.50 |
Combinations/Pair | 1.11 |
Mean z-score | -1.77 |
Structure conservation index | 0.73 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745282 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 912119 120 + 1281640 UAUCCCAAUGUCUAAGUUUUUGCCAUUGAAAUCAAUGUUUUCAAAAUUUGGAUGGGAAUCUAUUGCGUAAGCGGAAUUCAUAAGGUCUUCCGAUUUAGUAGCUUGCGUAUGUUUUGUUAC ..(((((...((((((((((...(((((....))))).....)))))))))))))))......(((((((((.(((((.....((....)))))))....)))))))))........... ( -30.90) >DroSec_CAF1 24061 120 + 1 UAUCCCAAUGUCUAAGCUUUUGCCAUUGAAUUCAAUGUUUUCAAAAUUUGGAUGGGAAUCUAUUGCGCAAGCGGAAUUCAUAAACUCUUCGGAUUCAGUAGCUUGCGUAUGUUUUGUUAU ..(((((...((((((.(((((.(((((....)))))....))))))))))))))))......(((((((((.((((((...........))))))....)))))))))........... ( -35.40) >DroEre_CAF1 27672 120 + 1 UAUCCCAAUUUCUAAGCUUUUGUCAUUCAAUGUAACGUUUUCAAAAUUUGGAUUGGAAUCUAUUGCGCAAGCAGAAUUGAUAAACUCAUCAGAUUCAGUACCAUGCGUAAGUUCUGUUAC .((((.(((((..((((.((...(((...))).)).))))...))))).))))..((((((.((((....))))....(((......))))))))).(((.((.((....))..)).))) ( -20.60) >DroYak_CAF1 24566 120 + 1 UAUUCCAAGUUCCAAGCUAUUGUCAUUCAAUGCAACGUUUUCAAAAUUUGGAUGGGAAUCUAUUGCGCAAGCGGCAUUCAUAAACUCAUUGGAUUCAGUAGCUGGCGUUAGUUCGCUUAC ..............((((((((..((((((((....((((........(((((....)))))((((....)))).......)))).)))))))).))))))))((((......))))... ( -28.70) >consensus UAUCCCAAUGUCUAAGCUUUUGCCAUUCAAUGCAACGUUUUCAAAAUUUGGAUGGGAAUCUAUUGCGCAAGCGGAAUUCAUAAACUCAUCGGAUUCAGUAGCUUGCGUAAGUUCUGUUAC ..(((((...((((((.(((((.(((((....)))))....))))))))))))))))......(((((((((.((((((...........))))))....)))))))))........... (-21.23 = -23.73 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:18 2006