Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 899,786 – 899,888 |
Length | 102 |
Max. P | 0.940151 |
Location | 899,786 – 899,888 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 94.37 |
Mean single sequence MFE | -23.90 |
Consensus MFE | -20.51 |
Energy contribution | -20.07 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -3.28 |
Structure conservation index | 0.86 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.940151 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 899786 102 + 1281640 UGUACAUAGGUAUGUAAGUGUUUAAGCUAUGUACGUUGUAUCGGCAAUAUGCAUGGUUAUCGAACAAAAAACACUCAGUUCUGUAUAAAUACAAAAAAGGAA ..(((((....))))).((((((((((((((((..((((....))))..)))))))))...((((............))))....))))))).......... ( -23.30) >DroSec_CAF1 8230 98 + 1 UGUACAUAGG----UAAGUGUUUAAGCUAUGUACGUUGUAUCGACAAUAUGCAUGGUUAUCAAACAAAAAACACUCAGUUCUGUACAAAUACAAAAAACGAA ((((((.((.----(.(((((((.(((((((((..((((....))))..)))))))))..........))))))).).)).))))))............... ( -24.20) >DroSim_CAF1 10336 98 + 1 UGUACAUAGG----UAAGUGUUUAAGCUAUGUACGUUGUAUCGACAAUAUGCAUGGUUAUCAAACAAAAAACACUCAGUUCUGUACAAAUACAAAAAAUGAA ((((((.((.----(.(((((((.(((((((((..((((....))))..)))))))))..........))))))).).)).))))))............... ( -24.20) >consensus UGUACAUAGG____UAAGUGUUUAAGCUAUGUACGUUGUAUCGACAAUAUGCAUGGUUAUCAAACAAAAAACACUCAGUUCUGUACAAAUACAAAAAACGAA ((((((..((......(((((((.(((((((((..((((....))))..)))))))))..........)))))))....))))))))............... (-20.51 = -20.07 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:12 2006