Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 896,931 – 897,044 |
Length | 113 |
Max. P | 0.535409 |
Location | 896,931 – 897,044 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 79.65 |
Mean single sequence MFE | -29.87 |
Consensus MFE | -16.64 |
Energy contribution | -15.48 |
Covariance contribution | -1.16 |
Combinations/Pair | 1.59 |
Mean z-score | -1.76 |
Structure conservation index | 0.56 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535409 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 896931 113 - 1281640 U--AAAGGUCAAGUUGCCAACUCAAAAAGGGGACGAUGCUUGGAAGUUGUAUUUUGAUGAAAUACCCGAAGAGAUUGUCGACGAGUUUUCGAUGCGUUAUGGAAUUGAGAAUAUU .--...(((......)))..(((((...(....)(((((.........(((((((...))))))).((((((..(((....))).))))))..)))))......)))))...... ( -21.70) >DroGri_CAF1 44943 112 - 1 ---ACAGGUCAAGCUGCCCACGCAAAAAGGUGACGAUGCGUGGAAGCUGUACUUUGACGAGAUUCCCGAGGAAAUUGUCGACGAGUUCUCGAUGCGAUAUGGCAUCGAGAAUAUA ---....(((.((((..(((((((....(....)..))))))).)))).......(((((..((((...)))).))))))))..(((((((((((......)))))))))))... ( -47.80) >DroWil_CAF1 10679 113 - 1 C--GAAGGUUAAACUUCCAACACAAAAAGGCGACGAUGCCUGGAAACUGUAUUUCGAUGAAAUCCCUGAAGAAAUUGUAGACGAGUUCUCUAUGAGAUACGGCAUAGAGAAUAUA .--((((......))))....((((..((((......))))(....)....(((((..(....)..)))))...))))......((((((((((........))))))))))... ( -23.30) >DroMoj_CAF1 33241 113 - 1 U--AUAGGUAAAGCUACCCACCCAAAAAGGCGAUGAUGCAUGGAAGCUCUAUUUUGAUGAAAUUCCCGAAGAAAUUGUUGACGAGUUUUCAAUGCGUUAUGGUAUCGAAAAUAUA .--...((((....))))...........((.(((((((((((((((((....(..(..(..(((.....))).)..)..).)))))))).))))))))).))............ ( -25.40) >DroAna_CAF1 239088 115 - 1 UUAUAAGGUUAAAUUGCCAAUCCAAAAAGGCGAUGACGCUUGGAAACUUUAUUUCGAUGAAAUUCCUGAGGAGAUUGUUGAUGAGUUUUCAAUGCGGUAUGGAAUUGAAAACAUU .......(((..((((((..........))))))..(((((((((((((....((((..(..((((...)))).)..)))).)))))))))).))).............)))... ( -26.80) >DroPer_CAF1 9900 113 - 1 U--GUAGGUUAAAUUGCCAACGCAAAAGGGUGACGAUGCAUGGAAACUCUAUUUCGAUGAGAUCCCCGAGGAAAUUGUCGAUGAGUUUUCAAUGCGCUACGGUAUCGAAAAUAUC .--...(((......)))..(((......))).((((((((((((((((....((((..(..(((....)))..)..)))).)))))))).))))((....))))))........ ( -34.20) >consensus U__AAAGGUUAAACUGCCAACCCAAAAAGGCGACGAUGCAUGGAAACUGUAUUUCGAUGAAAUUCCCGAAGAAAUUGUCGACGAGUUUUCAAUGCGAUAUGGAAUCGAAAAUAUA ......(((......)))............(((((((....(....)....(((((..........)))))..)))))))....(((((((((((......)))))))))))... (-16.64 = -15.48 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:11 2006