Locus 131

Sequence ID 4_DroMel_CAF1
Location 892,837 – 892,954
Length 117
Max. P 0.950808
window211

overview

Window 1

Location 892,837 – 892,954
Length 117
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 86.96
Mean single sequence MFE -34.80
Consensus MFE -28.42
Energy contribution -28.10
Covariance contribution -0.32
Combinations/Pair 1.23
Mean z-score -3.01
Structure conservation index 0.82
SVM decision value 1.41
SVM RNA-class probability 0.950808
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 892837 117 - 1281640
ACGCCCCCUUUUUGCGGAUUGUCGUGCGAUUAAGUUUUUGUGCGUAUGAGCGUAUGCGAUGGUGUUUAAAUGCUUAACAUUGUCGUAGUGAUGAAUCGCAGGAUAAUCCGGUUUAUA
..............(((((((((.(((((((........((((((....))))))((((..(((((.........)))))..)))).......))))))).)))))))))....... ( -42.00)
>DroSec_CAF1 1013 111 - 1
ACGGCCUCUUUUUGCGGAUUAAUGUGCGAUUUAAUUUUUGGGCGUAUGAACGUAUGAGAUGAUGUUUAAAUGCU------UGUCUUAGUGAUGAAUCGCAGGAUAAUCUGCUUUAUA
.............((((((((.(.((((((((.......((((((.(((((((........))))))).)))))------)(((.....))))))))))).).))))))))...... ( -33.20)
>DroSim_CAF1 1115 111 - 1
ACGGCCUCUUUUUGCGGAUUCAUGUGCGAUUUAGUUUUUGUGUGUAUGAACGUAUGAGAUGAUGUUUAAAUGCU------UGUCUUAGUGAUAAAUCGCAGGAUAAUCCGCUUUAUA
.............(((((((..(.(((((((((((((..........))))...(((((..(.((......)))------..)))))....))))))))).)..)))))))...... ( -29.20)
>consensus
ACGGCCUCUUUUUGCGGAUUAAUGUGCGAUUUAGUUUUUGUGCGUAUGAACGUAUGAGAUGAUGUUUAAAUGCU______UGUCUUAGUGAUGAAUCGCAGGAUAAUCCGCUUUAUA
.............((((((((.(.((((((((.........((((.(((((((........))))))).))))........(((.....))))))))))).).))))))))...... (-28.42 = -28.10 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:09 2006