| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 872,776 – 872,896 |
| Length | 120 |
| Max. P | 0.874490 |
| Location | 872,776 – 872,896 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.67 |
| Mean single sequence MFE | -21.44 |
| Consensus MFE | -18.94 |
| Energy contribution | -19.38 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.874490 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 872776 120 - 1281640 CAAAUAGGCAUAUCAAGAAGCACCACCAUGAAUAAAAUUCUACGCACCCCCAAUUUACGAGCGUAACCAGUUUUAUCAGAUAAUAAACAGGUAUCUGGUUUCAAUUGUGAAGUUCCAACA ......((.((.(((.(((((..........((((((((.(((((...............)))))...))))))))((((((.........))))))))))).....))).)).)).... ( -19.26) >DroSec_CAF1 48443 120 - 1 CAAAUAGGAAUAUCAAGAAACACCACCAUUAAUAAAAUUCUGCGCACCCCCAAUUUACGAGCGUAACCAUUUUUAUCAGAUAAUAAACAGGUAUCUGGUUUCAAUUGUGAAGUUCCAACA ......(((((.(((.(((((..........((((((...(((((...............))))).....))))))((((((.........))))))))))).....))).))))).... ( -21.76) >DroSim_CAF1 43667 120 - 1 CAAAUAGGAAUAUCAAGAAACACCACCAUUAAUAAAAUUCUGCGCACCCCCAAUUUACGAGCGUAACCAGUUUUAUCAGAUAAUAAACAGGUAUCUGGUUUCAAUUGUGAAGUUCCAACA ......(((((.(((.(((((..........((((((((.(((((...............)))))...))))))))((((((.........))))))))))).....))).))))).... ( -23.66) >DroEre_CAF1 49569 120 - 1 CAAAUAGAAAUGUCAAGAAACACCACCAUUAAUAAAAUUCUGCGCACCCUCAAUGUACGCGCGUAACCAGUUUUAUCAGAUAAUAAACAGGUAUCUGGUUUCAAUUGUGAAGUUCCAACA ......(((...(((.(((((..........((((((((.(((((.............))))).....))))))))((((((.........))))))))))).....)))..)))..... ( -18.42) >DroYak_CAF1 54696 117 - 1 CAAAUAGGAAUGUCAGAAAACACCACCAUUAAU---AUUUUGCGCACCCUCCAUGUACGCGCGUAACCAGUUUUAUCAGAUAAUAAACAGGUAUCUGGUUUCAAUUGUGAAGUUCCAACA ......(((((.(((.((...............---.....((((.............))))(.((((((...((((............)))).)))))).)..)).))).))))).... ( -24.12) >consensus CAAAUAGGAAUAUCAAGAAACACCACCAUUAAUAAAAUUCUGCGCACCCCCAAUUUACGAGCGUAACCAGUUUUAUCAGAUAAUAAACAGGUAUCUGGUUUCAAUUGUGAAGUUCCAACA ......(((((.(((.........................(((((...............)))))..(((((..((((((((.........))))))))...)))))))).))))).... (-18.94 = -19.38 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:08 2006