Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 160,590 – 160,710 |
Length | 120 |
Max. P | 0.751768 |
Location | 160,590 – 160,710 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.61 |
Mean single sequence MFE | -32.59 |
Consensus MFE | -15.63 |
Energy contribution | -16.66 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.28 |
Mean z-score | -2.26 |
Structure conservation index | 0.48 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751768 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 160590 120 + 1281640 AAUUCCCUUAAAAAGUGUUGAUCGAUUGCCAUUCGAUCACUUCCUUUUCGGUAUGGUAACGUGUCAUUCUAUAACAAUAUUGAACGGCAGAAUGAUGGGCGACCCAUUGGAUUUAAAAAU ...(((.(..(((((.(.(((((((.......)))))))...))))))..)...(((..(.(((((((((..................))))))))).)..)))....)))......... ( -24.27) >DroVir_CAF1 9658 120 + 1 AAUACCACUGAAAGAUGUGAAGCGUCUGCCAUACGAUCACUUUCUGUUUGGCAUGGUCACAUGCCACUCAAUUACCGUCAUGAACGGCAUGAUGAUGGGUGAUCCCUUGGAUCUUAAGAU ............(((((.....))))).(((...((((((((..((..(((((((....)))))))..)).....(((((((.....)))))))..))))))))...))).......... ( -37.30) >DroPse_CAF1 5726 120 + 1 AAUACCCUUGAAGAACGUGAAUCGUCUGCCAUAUGAUCACUUUCUUUUUGGCAUGGCAACAUGUCAUUCUAUUACUGUACUGAAUGGUACGAUGAUGGGUGACCCACUGGAUCUUAAAAU ..(((((..((((((.((((.((((.......)))))))).)))))).(((((((....)))))))....((((.((((((....)))))).))))))))).((....)).......... ( -33.70) >DroMoj_CAF1 15164 120 + 1 AAUACCCCUUAAAGAUGUUAAGCGAUUACCAUACGAUCAUUUUCUGUUUGGGAUGGUCACGUGCCAUUCAAUUACUUUUAUGAAUGGUACAAUGAUGGGUGAUCCCUUAGAUCUUAAGAU .......(((((.(((.(((((.(((((((....(((((((((......)))))))))..((((((((((..........)))))))))).......))))))).))))))))))))).. ( -39.50) >DroAna_CAF1 38525 120 + 1 AAUACCAUUGAGAGAUGUCCUUCGUCUUCCGUAUGAUCAUUUUCUUUUUGGUAUGGUAACAUGUCAUUCAAUAACCAUUCUUAAUGGCAUAAUGAUGGGUGAUCCGCUGGACCUCAAAAU .......((((((((((.....)))))((((...((((((........((..(((....)))..))........(((((.(((......))).)))))))))))...)))).)))))... ( -27.10) >DroPer_CAF1 7603 120 + 1 AAUACCCUUGAAGAACGUGAAUCGUCUGCCAUAUGAUCACUUUCUUUUUGGCAUGGCAACAUGUCAUUCUAUUACUGUACUGAAUGGUACGAUGAUGGGUGACCCACUGGAUCUUAAAAU ..(((((..((((((.((((.((((.......)))))))).)))))).(((((((....)))))))....((((.((((((....)))))).))))))))).((....)).......... ( -33.70) >consensus AAUACCCUUGAAAAAUGUGAAUCGUCUGCCAUACGAUCACUUUCUUUUUGGCAUGGUAACAUGUCAUUCAAUUACUGUACUGAAUGGCACAAUGAUGGGUGACCCACUGGAUCUUAAAAU ..(((((.............((((((((((((..((......)).....((((((....))))))..................)))))).)))))))))))................... (-15.63 = -16.66 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:12 2006