Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 871,932 – 872,047 |
Length | 115 |
Max. P | 0.861207 |
Location | 871,932 – 872,047 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.39 |
Mean single sequence MFE | -33.29 |
Consensus MFE | -16.54 |
Energy contribution | -17.06 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.29 |
Mean z-score | -1.95 |
Structure conservation index | 0.50 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861207 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 871932 115 - 1281640 GAGGGGAGUUAGGGACUUGGGACCCUAAAUUAUCCGUGAGUAUGCCAAUGCACGAGUCAUAU----ACAUCAAUGUAAUGGGGGAUGCUCAUAUUGCCCACCAAGUUUC-AUGGCUUCCA ...(((((((((..((((((..(((((........((((.(.(((....)))..).)))).(----(((....)))).)))))...((.......))...))))))..)-.)))))))). ( -36.60) >DroSec_CAF1 47478 119 - 1 AAGGGCAGUUAGGGACUUGGGAGCCUAAAUUAUCCGUGAGUAUGGCGAUGCAU-ACUCAUAUAUGUACAUCAAUGUAAUGGGGGAUGCUCAUAUCGCCCACCAAGUUUCAAUGGCUUCCA ..(((.((((((..((((((...............(((((((((......)))-)))))).....((((....)))).((((.((((....)))).))))))))))..)..)))))))). ( -39.60) >DroSim_CAF1 42701 119 - 1 AAGGGCAGUUAGGGAUUUGGGAGCCUAAAUUAUCCGUGAGUAUGCCGAUGCAU-ACUCAUAUAUGUACAUCAAUGUAAUGGGGGAUGCUCAUAUCGCCCACCAAGUUUCAAUGGCUUCCA ..(((.((((((..((((((...............((((((((((....))))-)))))).....((((....)))).((((.((((....)))).))))))))))..)..)))))))). ( -39.90) >DroEre_CAF1 47619 106 - 1 AAAGGGAGUUUGAGAUAUGGGUCCUUAAAUCAUCCGUCAGUACGCCA----------CAU---UUUUCAUAAAAGAAAAUGGGGGUGCUC-UAUUGCCCAGCGAGUUUCAAUGGCUUCUA ...(((((((((((((.(((((................(((((.((.----------(((---((((.......))))))))).))))).-....)))))....)))))))..)))))). ( -28.60) >DroYak_CAF1 53010 96 - 1 AAA----GUUAGAAAUUUGGGUCCCUAAAACCUCUGUCAGUAUA-------------------UGUACAUAAAUGUAAAUGGGGGUGCUC-UAUUGCCCAGCGAUUUUCAAUGGCUUCUA .((----((((((((.((((((.......((((((((...((((-------------------(........))))).))))))))....-....))))))....))))..))))))... ( -21.76) >consensus AAGGGCAGUUAGGGAUUUGGGACCCUAAAUUAUCCGUGAGUAUGCCAAUGCA__A_UCAUAU_UGUACAUCAAUGUAAUGGGGGAUGCUCAUAUUGCCCACCAAGUUUCAAUGGCUUCCA ..(((.((((((((((((((.............................................(((......))).((((.((((....)))).)))))))))))))..)))))))). (-16.54 = -17.06 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:07 2006