Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 871,732 – 871,852 |
Length | 120 |
Max. P | 0.840512 |
Location | 871,732 – 871,852 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.36 |
Mean single sequence MFE | -35.98 |
Consensus MFE | -30.58 |
Energy contribution | -32.14 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.13 |
Mean z-score | -1.55 |
Structure conservation index | 0.85 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.840512 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 871732 120 + 1281640 UGGGUCAGGGCGACUUUAAAUGUGGACAAGUGAUGUAGGCAGUGGGUGGUGGCUGCUGACUGAUGGCUGGUGACUACCAAAACAAUUAUUCUUAUCUAGGGUAUUUGGCUGCCAUUGGAG ((.((((..((.((.......)).).)...)))).))((((((.((((((.((((((.......))).))).))))))....(((.((((((.....)))))).)))))))))....... ( -36.90) >DroSec_CAF1 47278 120 + 1 UGGGCCAGGGCGACUUUAAAUGUGGACAAGUGAAGUAGGCAGUGGGUGGUGGCUGCUGACUGAUGGCUGGUGACUACCAAAACAAUUAUUCUUAUCUAGGGUAUUUGGCUGCCAUUGGAG ....((((....((((((..((....))..)))))).((((((.((((((.((((((.......))).))).))))))....(((.((((((.....)))))).))))))))).)))).. ( -40.60) >DroSim_CAF1 42501 120 + 1 UGGGCCAGGGGGACUUUAAAUGUGGACAAGUGAAGUAGGCAGUGGGUGGUGGCUGUUGACUGAUGGCUGGUGACUACCAAAACAAUUAUUCUUAUCUAGGGUAUUUGGCUGCCAUUGGAG ....((((....((((((..((....))..)))))).((((((.(((((((((((((....)))))))....))))))....(((.((((((.....)))))).))))))))).)))).. ( -38.20) >DroEre_CAF1 47430 109 + 1 UGGGCCAAGGCGACUUUAGAUGUGGACAAGUGAAGUAGGCAGUGGGUGGUGGCUGAU-------GGCUGGUGACUACCAAAACAAUUAUUUUUAUCUG----CUUUGGCUGCCAUUGGAG ..((((((((((((((((..((....))..)))))).....((.((((((.(((...-------....))).))))))...)).............))----)))))))).......... ( -33.60) >DroYak_CAF1 52830 112 + 1 UGGGCCAGGGCGACUUUAAAUGUGGACAAGUGAAGUAGGCAGUGGGUGGUGGCUGCU-------GUCUGG-GACUACCAAAACAAUUAUUUUUAUCUAGGGUAUUUGGCUGCCAAUAGAG ...((....)).((((((..((....))..)))))).((((((.(((((((((....-------)))...-.))))))....(((.((((((.....)))))).)))))))))....... ( -30.60) >consensus UGGGCCAGGGCGACUUUAAAUGUGGACAAGUGAAGUAGGCAGUGGGUGGUGGCUGCUGACUGAUGGCUGGUGACUACCAAAACAAUUAUUCUUAUCUAGGGUAUUUGGCUGCCAUUGGAG ....((((....((((((..((....))..)))))).((((((.((((((.((((((.......))).))).))))))....(((.((((((.....)))))).))))))))).)))).. (-30.58 = -32.14 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:05 2006