Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 864,923 – 865,039 |
Length | 116 |
Max. P | 0.543406 |
Location | 864,923 – 865,039 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.98 |
Mean single sequence MFE | -29.10 |
Consensus MFE | -21.71 |
Energy contribution | -23.52 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.03 |
Mean z-score | -1.48 |
Structure conservation index | 0.75 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543406 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 864923 116 + 1281640 GUGGCCUGUCCUCUUCAGGCCAUUGAUGGUAUUAGCGCUGUCUCUGUUGGGCCUCUUAAAAGUUAAAAGGGG-CUCGACCAAUUACACCUACACCCAUCUUGUUUUAGCACUUGA---UC ((((((((.......)))))))).(((((...(((.(.(((....((((((((((((.........))))))-)))))).....)))))))...)))))................---.. ( -38.20) >DroSec_CAF1 41780 115 + 1 UUGGCCUGUCCUCUUCAGGCCAUUCAUGAUGUUAGCGCUGUCUCUGUUGGGCCUCUUAAAAGAUAAAAGGGGCCUCGACCAAUUACACCUACACCCAUCUUGUUUUAGCACUCGC----- .(((((((.......)))))))..((.((((.(((.(.(((....((((((((((((.........)))))))).)))).....)))))))....)))).)).............----- ( -32.60) >DroEre_CAF1 42560 120 + 1 GUGGCCUGUCCUCUUCAGGCCAUUCAUGGUAUUAGCGCUGUCUCUCUUGGUCCUCUUAAAAGUUAAAAUGGGCCUCGACCAAUUACACCUACACCCAUCUUGUUCUAGCACUCGCAUUUC ((((((((.......))))))))..((((...(((.(.(((...((..(((((................)))))..))......)))))))...)))).........((....))..... ( -25.59) >DroYak_CAF1 48615 119 + 1 -UGGCCUGUCCUCUUUACGCCAUUCAUGGUAUUAGCGCUGUCUCUGUUGGGCCUCAUAAAAGUAAAAAGCGGCCUCGACCAAUUACACCUACACCCAUCUUAUUUUAGCAUUCGCAUUUU -((((.((.......)).))))...((((...(((.(.(((....((((((((.(.............).)))).)))).....)))))))...)))).........((....))..... ( -20.02) >consensus GUGGCCUGUCCUCUUCAGGCCAUUCAUGGUAUUAGCGCUGUCUCUGUUGGGCCUCUUAAAAGUUAAAAGGGGCCUCGACCAAUUACACCUACACCCAUCUUGUUUUAGCACUCGC___UC .(((((((.......)))))))...((((...(((.(.(((....((((((((((((.........)))))))).)))).....)))))))...))))...................... (-21.71 = -23.52 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:04 2006