Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 854,317 – 854,437 |
Length | 120 |
Max. P | 0.890303 |
Location | 854,317 – 854,437 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.75 |
Mean single sequence MFE | -28.62 |
Consensus MFE | -16.31 |
Energy contribution | -17.25 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.07 |
Mean z-score | -1.97 |
Structure conservation index | 0.57 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 854317 120 - 1281640 CACCACUAUAGGACCCAACACACUUUGCAUGUGAAUGCGGUGCACGUGCAUCUGCAUCUGCCGUGUACUCUGUGUUGUGCAUUUGUGUUAAGUGUUAGCUACAAAUCAUUUCACUACAAA ........(((((..(((((((....((((....))))((((((((.(((........))))))))))).)))))))((.((((((((((.....)))).))))))))..)).))).... ( -33.00) >DroSec_CAF1 34405 114 - 1 CACCAUUAUAGGACCCAACACAUUUUGCAUGUGAAUGCGGUGCACGUGCAU------CUGCCUUGUACUCUGUGUUGUGCAUUUGUGUUAAGUGUUAGCUACAAAUCAUUUCCCUACAAA ........((((...(((((((....((((....))))((((((.(.((..------..))).)))))).)))))))((.((((((((((.....)))).))))))))....)))).... ( -29.40) >DroEre_CAF1 34864 90 - 1 --------------GCAACAC-UUUUGCAUGUGAAUGCCAUGCACGUGCAU------CUGGCUUGUACACUGUGUUGUGCAUUUGUGUUUAGUGCUAGCUACAAAUA---------CAAA --------------(((((((-...((((((.(....))))))).(((((.------......)))))...)))))))...((((((((((((....))))..))))---------)))) ( -26.50) >DroYak_CAF1 36812 90 - 1 --------------GCAACUC-UUUUGCAUGUGAAUGCAGUGGACGUGCAC------CUGGCUUGUACACUCUGUUGUGCAUUUGUGUUUAGUGCCAGCUACAAAUA---------AUAC --------------(((..((-(.((((((....)))))).)))..)))..------((((((((.((((..((.....))...)))).))).))))).........---------.... ( -25.60) >consensus ______________CCAACAC_UUUUGCAUGUGAAUGCGGUGCACGUGCAU______CUGCCUUGUACACUGUGUUGUGCAUUUGUGUUAAGUGCUAGCUACAAAUA_________CAAA ...............((((((...((((((....)))))).....(((((.............)))))...))))))...((((((((((.....)))).)))))).............. (-16.31 = -17.25 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:53 2006