Locus 123

Sequence ID 4_DroMel_CAF1
Location 852,348 – 852,444
Length 96
Max. P 0.864708
window199

overview

Window 9

Location 852,348 – 852,444
Length 96
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 80.12
Mean single sequence MFE -26.30
Consensus MFE -18.28
Energy contribution -19.68
Covariance contribution 1.40
Combinations/Pair 1.22
Mean z-score -1.93
Structure conservation index 0.70
SVM decision value 0.84
SVM RNA-class probability 0.864708
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 852348 96 + 1281640
CGGUCCCGAAAGCAAACUAU-UUUCUUGCUUAGUUCG--UUGUUGCUAAUUU-UUCUGUGGGCCAGUUUUGCCAGAUCUCUCAGGCAGAACUGGAUAAAC
.((((((((((((((.....-....))))(((((...--.....)))))..)-))).).)))))(((((((((.((....)).)))))))))........ ( -27.30)
>DroSec_CAF1 32460 96 + 1
CGGUCCCGAAAGAAAACUAU-UUUCUUGUUUAGUUCG--UUGUUGCUAAUUU-UUCUGUGGGCCAGUUUUGCCAGAUCUCUCAGGCAGAACUGGAUAAAC
....((((.((((((.....-))))))..(((((...--.....)))))...-.....))))(((((((((((.((....)).)))))))))))...... ( -27.70)
>DroEre_CAF1 32768 97 + 1
UGGUCCCGAAAGCAAGCUUU-UUUCUUGUUUAGUUCG--CUGUUGCUAAUUUUUUCUGUGGGCCAGUUUUGCCAGAUCUCUCAGGCAGAACUGGAUAAAC
....((((.(((((((....-...)))))))((((.(--(....)).)))).......))))(((((((((((.((....)).)))))))))))...... ( -28.60)
>DroWil_CAF1 42987 90 + 1
-------AAAAGCGAUUUAU-UUUGUUGUUUUGUUUGGCUCGCUGCCUGCUU-UCCGCUUGUCCAGUUUUACCAGCUUGGCUUGCAAGAACUGGAUAAA-
-------.((((((((....-...))))))))((..(((.....))).))..-.....((((((((((((.(.(((...))).)..)))))))))))).- ( -23.60)
>DroYak_CAF1 34713 97 + 1
CGGUCCCAAACGCCAGCUUUUUUUCUUGUUUAGUUCG--UUGUUGCUAAUUU-UUCUGUGGGCCAGUUUUGCCAGAUCUCUCAGGCAGAACUGGAUAAAC
....((((...(....)............(((((...--.....)))))...-.....))))(((((((((((.((....)).)))))))))))...... ( -24.30)
>consensus
CGGUCCCGAAAGCAAACUAU_UUUCUUGUUUAGUUCG__UUGUUGCUAAUUU_UUCUGUGGGCCAGUUUUGCCAGAUCUCUCAGGCAGAACUGGAUAAAC
....((((...(((((........)))))(((((..........))))).........))))(((((((((((.((....)).)))))))))))...... (-18.28 = -19.68 +   1.40) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:51 2006