Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 156,607 – 156,727 |
Length | 120 |
Max. P | 0.671752 |
Location | 156,607 – 156,727 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.00 |
Mean single sequence MFE | -27.44 |
Consensus MFE | -25.58 |
Energy contribution | -24.50 |
Covariance contribution | -1.08 |
Combinations/Pair | 1.21 |
Mean z-score | -1.14 |
Structure conservation index | 0.93 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671752 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 156607 120 + 1281640 CGAAUAAAAAACGGGUACGAAAAGAAAAGUGUGAGUGCUCUAGCGAACGAACAAUAUCAAGUUUGCGCCUUGGAUUCUUAUCAUUUGUCUUUUAUCUAUUGAUGUUGCCUUUUCGAUUAG ((((.....((((.(((..((((((.(((((((((...(((((((..(((((........))))))))..))))..)))).))))).))))))...)))...)))).....))))..... ( -24.20) >DroSec_CAF1 31064 120 + 1 CGAAUAAAAAACGGGUACGAAAAGAAAAGUGUGAGUGCUCUAGCGAACAAACAAUAUCAAGUUUGCGCUUUGGAUUCUUAUCACUUGUCUUUUAUCUAUUGAUGUUGCCUUUUCGAUUAG ((((.....((((.(((..((((((.(((((((((..((..((((..(((((........)))))))))..))...)))).))))).))))))...)))...)))).....))))..... ( -29.00) >DroSim_CAF1 16197 120 + 1 CGAAUAAAAAACGGGUACGAAAAGAAAAGUGUGAGUGCUCUAGCGAACAAACAAUAUCAAGUUUGCGCUUUGGAUUCUUAUCACUUGUCUUUUAUCUAUUGAUGUUGCCUUUUCGAUUAG ((((.....((((.(((..((((((.(((((((((..((..((((..(((((........)))))))))..))...)))).))))).))))))...)))...)))).....))))..... ( -29.00) >DroEre_CAF1 18565 120 + 1 CGAAUAAAAAACGUAUACGAGAAGAAAAGUGUGAGUGCUUAAGCGAACAAACCAUAUCAAGUUCGCGCUUUGGAUUCUUAUCACUUCUCUUUUAUCUAUUGAUGUUGCCUUUUCGAUUAG ((((.....(((((.....((((((.(((((.((((.(....((((((............)))))).....).))))....))))).))))))........))))).....))))..... ( -28.52) >DroYak_CAF1 18821 120 + 1 CGAAUAAAAAACGUGUACGAGAGAAAAAGUGUGAGUGCUUAAGUGAGCAAACAAUAUCAAGUUCGCGCUUUGGAUUCUUAUCACUUCUCUUUUAUCUAUUGAUGUUGCCUUUUCGAUUAG ((((.....((((((((.((((((((((((((((((((((....)))))............)))))))))).(((....)))..))))))).)))......))))).....))))..... ( -26.50) >consensus CGAAUAAAAAACGGGUACGAAAAGAAAAGUGUGAGUGCUCUAGCGAACAAACAAUAUCAAGUUUGCGCUUUGGAUUCUUAUCACUUGUCUUUUAUCUAUUGAUGUUGCCUUUUCGAUUAG ((((.....((((.(((..((((((.(((((.((((.(....((((((............)))))).....).))))....))))).))))))...)))...)))).....))))..... (-25.58 = -24.50 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:10 2006