Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 830,213 – 830,332 |
Length | 119 |
Max. P | 0.607239 |
Location | 830,213 – 830,332 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.20 |
Mean single sequence MFE | -40.86 |
Consensus MFE | -37.04 |
Energy contribution | -36.52 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.14 |
Mean z-score | -1.20 |
Structure conservation index | 0.91 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607239 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 830213 119 + 1281640 AUCCACUUCCUCAUUCACCCACGGAACUGUUCCGAUGA-GCUGGGCUAGAAGUGUAUACUUGAGAGCUUGACAAUGUGUCGAGUUCGUUUCGCGGCGUUAAUGAGGUACCGGAGUCCGGG ........(((((((.((((.((((((.((((....))-))......................(((((((((.....))))))))))))))).)).)).)))))))..((((...)))). ( -41.50) >DroSec_CAF1 8124 119 + 1 AUCCACAUCCUCAUUUACCCACGGAACUGUUCCGAUGA-GCUGGGCUAGAAGUAUAUACUUGAGAGCUUGACAAUGUGUCGAGUUCGUUUCGCGGCGUUAAUGAGGUACCGGUGUCCGGG ........(((((((.((((.((((((.((((....))-))........((((....))))..(((((((((.....))))))))))))))).)).)).)))))))..((((...)))). ( -41.70) >DroSim_CAF1 7640 119 + 1 AUCCACUUCCUCAUUUACCCACGGAACUGUUCCGAUGA-GCUGGGCUAGAAGUAUAUACUUGAGAGCUUGACAAUGUGUCGAGUUCGUUUCGCGGCGUUAAUGAGGUACCGGUGUCCGGG ........(((((((.((((.((((((.((((....))-))........((((....))))..(((((((((.....))))))))))))))).)).)).)))))))..((((...)))). ( -41.70) >DroEre_CAF1 7482 118 + 1 GUCCACU-CCUCAUUCACCCACGGAGCUCUUCCGAUGA-GCUGCGCUGGAAGAGUAUACUUGAAGGUUUGACAUUGUGUCGAGUUCGUUUCGCGGCGUUAAUGAGGUGCCGGGGUACGGG .....(.-(((((((.((((.(((((((((((((.((.-....)).)))))))))......(((..((((((.....)))))))))..)))).)).)).))))))).)(((.....))). ( -40.20) >DroYak_CAF1 7482 119 + 1 AUCCACU-UCUCAUUUACCCACGGAGCUCUUCCGAUGAUGCUGAGCUAGAAGAGUAUACUUAAGGGCUUGACAUUGUGUCGAGUUCGUUUCGCGGCGUUAAUGAGGUGCCGGAGUCCGGG ...(((.-.((((((.((((.(((((((((((................)))))))........(((((((((.....)))))))))..)))).)).)).)))))))))((((...)))). ( -39.19) >consensus AUCCACUUCCUCAUUUACCCACGGAACUGUUCCGAUGA_GCUGGGCUAGAAGUGUAUACUUGAGAGCUUGACAAUGUGUCGAGUUCGUUUCGCGGCGUUAAUGAGGUACCGGAGUCCGGG ........(((((((.((((.(((((...))))).....((.((((...(((......)))..(((((((((.....))))))))))))).)))).)).)))))))..(((.....))). (-37.04 = -36.52 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:04 2006