Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 827,612 – 827,725 |
Length | 113 |
Max. P | 0.520045 |
Location | 827,612 – 827,725 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 78.14 |
Mean single sequence MFE | -27.27 |
Consensus MFE | -23.51 |
Energy contribution | -23.07 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -0.69 |
Structure conservation index | 0.86 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 827612 113 + 1281640 CUACUACAGCUGAGGGUGCUGAUGUGAUGUCAGAGUUUUACAAUGGACUCUUCGAGACGCUUAGAAAUCAGCAGCUGCGCAUAGUGGGUGCACACAUUUUGUAGCGACUGGGA ........((...((.(((((((.((((((((((((((......)))))))....)))).)))...))))))).))..)).((((.(.((((.......)))).).))))... ( -32.30) >DroSec_CAF1 5229 85 + 1 CGACUACAGCUGAGGAUGCUGAAGUGAUGUCAGAGCAUUA-------CUCUUCGAGACGCUUAGAAAUCAGUAGCUGCGCAUAGUGGGUGCA--------------------- ......((((((..(((....(((((.(.((((((.....-------))))..)).))))))....)))..)))))).((((.....)))).--------------------- ( -24.60) >DroSim_CAF1 4805 85 + 1 CGACUACAGCUGAGGAUGCUGAUGUGAUGUCAGAGCAUUA-------CUCUUCGAGACGCUUAGAAAUCAGCAGCUGCGCAUAGUGGGUGCA--------------------- ......((((((..(((.((((.(((.(.((((((.....-------))))..)).))))))))..)))..)))))).((((.....)))).--------------------- ( -24.90) >consensus CGACUACAGCUGAGGAUGCUGAUGUGAUGUCAGAGCAUUA_______CUCUUCGAGACGCUUAGAAAUCAGCAGCUGCGCAUAGUGGGUGCA_____________________ ......((((((..(((.((((.(((.(.((((((............))))..)).))))))))..)))..)))))).((((.....))))...................... (-23.51 = -23.07 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:02 2006