Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 827,361 – 827,470 |
Length | 109 |
Max. P | 0.600174 |
Location | 827,361 – 827,470 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 80.80 |
Mean single sequence MFE | -34.05 |
Consensus MFE | -20.31 |
Energy contribution | -23.12 |
Covariance contribution | 2.81 |
Combinations/Pair | 1.14 |
Mean z-score | -1.89 |
Structure conservation index | 0.60 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.600174 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 827361 109 + 1281640 ACCGACCAAAUAUUUUUUUGUUCGGUGUUCGUUGCUUAGUGCUCAGUUCUGCGGGCAGCGUUUUGUAUACAUACGCUGUGAAAUCAGGCAGAGGGUGUCCAAACAACUG (((((.((((......)))).)))))....((((.((.(..(((...(((((..(((((((..((....)).)))))))(....)..))))))))..)..)).)))).. ( -32.00) >DroSec_CAF1 4979 108 + 1 ACCGACCACAUAUUU-UUUGUUCGGUGUUCGUUGCUUAGUGCUCAGCUCUGCGGGCAGCGUUUGGUAUACAUACGCUGUUAAAUCAGGCAGAGGGUAUCCGAGCAACUG (((((..(((.....-..))))))))....(((((((.(((((...((((((.((((((((.((.....)).)))))))).......)))))))))))..))))))).. ( -39.60) >DroSim_CAF1 4555 108 + 1 ACCGACCACAUAUUU-UUUGUUCGGUGUUCGUUGCUUAGUGCUCAGCUCUGCGGGCAGCGUUUGGUAUACAUACGCUGUUAAAUCAGGCAGAGGGUAUCCGAGCAACUG (((((..(((.....-..))))))))....(((((((.(((((...((((((.((((((((.((.....)).)))))))).......)))))))))))..))))))).. ( -39.60) >DroEre_CAF1 5375 83 + 1 ACCGACCA-----------GUUU---GUC----------UGUUUUGUUCUGCGGGCAGCGUUCGGUAUACAUACGCUGUGAAAUCGGGCAG--UGUAUCCAAGCAACUG (((((...-----------(((.---(((----------(((........)))))))))..)))))....(((((((((........))))--)))))........... ( -25.00) >consensus ACCGACCACAUAUUU_UUUGUUCGGUGUUCGUUGCUUAGUGCUCAGCUCUGCGGGCAGCGUUUGGUAUACAUACGCUGUGAAAUCAGGCAGAGGGUAUCCAAGCAACUG .................((((((((((..(.((((((..(((........))).(((((((.((.....)).)))))))......)))))).)..)).))))))))... (-20.31 = -23.12 + 2.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:01 2006