Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 823,448 – 823,547 |
Length | 99 |
Max. P | 0.624690 |
Location | 823,448 – 823,547 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 78.72 |
Mean single sequence MFE | -33.47 |
Consensus MFE | -18.50 |
Energy contribution | -17.53 |
Covariance contribution | -0.97 |
Combinations/Pair | 1.43 |
Mean z-score | -1.71 |
Structure conservation index | 0.55 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542070 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 823448 99 + 1281640 CCCGUACUGGCUGCUCAGAUGAUUGUGCAAUUCCUGAAGGCAGCUUUCGUGCUGCAGUCUCUGCACGUUCUGAAGUUGUUGUUGCUGUUGAGCACUCGC ........(..(((((((..((.((((((......((..(((((......)))))..))..)))))).))...(((.......))).)))))))..).. ( -29.20) >DroPse_CAF1 2875 99 + 1 CCCGAACUGUGUAUUCAGCUGAUGAUGCAGCUCCUGCAGGCUACUCUCUUGCUGCAGCCUCUGCACAUUUUGGAGUUGCUGCUGCUGCUGAAUACUUGC ..........(((((((((.(.....((((((((.(((((.......)))))(((((...)))))......)))))))).....).))))))))).... ( -36.70) >DroEre_CAF1 2232 99 + 1 UCCGAACUGGCUGCUCAGUUGAUUGUGCAAUUCCUGAAGGCAGCUUUCGUGCUGCAGUCUCUGCACGUUCUGAAGGCGUUGUUGCUGUUUAGCACUCGC ...(((..((((((((((..((((....)))).))))..)))))))))((((((((((....(((((((.....)))).))).)))))..))))).... ( -29.50) >DroWil_CAF1 2306 96 + 1 CGAAAACUGAGCACUAAGCUGCUGGUGCAGCUCCUGCAGGCAGCUCUCCUGCUGCAAUCGCUGGACAUUGUGCAGUUG---CUGCUGCUGAAUGCUAGC .((.......(((...((((((....))))))..)))..(((((......)))))..))(((((.((((..(((((..---..)))))..))))))))) ( -39.30) >DroYak_CAF1 1897 99 + 1 CCCAAACUGGCUGCUCAGUUGAUUGUGCAAUUCCUGAAGGCAGCUUUCGUGCUGCAGUCUCUGCACGUUCUGAAGGUGUUGUUGCUGUUGAGCACUCGC ........((((((((((..((((....)))).))))..))))))...((((((((((..(.((((.(.....).)))).)..)))))..))))).... ( -29.40) >DroPer_CAF1 2506 99 + 1 CCCGAACUGUGUAUUCAGCUGAUGAUGCAGCUCCUGCAGGCUACUCUCUUGCUGCAGCCUCUGCACAUUUUGGAGUUGCUGCUGCUGCUGAAUACUUGC ..........(((((((((.(.....((((((((.(((((.......)))))(((((...)))))......)))))))).....).))))))))).... ( -36.70) >consensus CCCGAACUGGCUACUCAGCUGAUGGUGCAACUCCUGAAGGCAGCUCUCGUGCUGCAGUCUCUGCACAUUCUGAAGUUGUUGCUGCUGCUGAACACUCGC ...........((((((((.(.....(((((..((....(((((......)))))....((..........))))..)))))..).))))))))..... (-18.50 = -17.53 + -0.97)
Location | 823,448 – 823,547 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 78.72 |
Mean single sequence MFE | -31.18 |
Consensus MFE | -17.42 |
Energy contribution | -16.78 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.39 |
Mean z-score | -1.78 |
Structure conservation index | 0.56 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 823448 99 - 1281640 GCGAGUGCUCAACAGCAACAACAACUUCAGAACGUGCAGAGACUGCAGCACGAAAGCUGCCUUCAGGAAUUGCACAAUCAUCUGAGCAGCCAGUACGGG ((...((((....)))).........(((((..((((((...(((..((((....).)))...)))...)))))).....)))))))..((.....)). ( -25.00) >DroPse_CAF1 2875 99 - 1 GCAAGUAUUCAGCAGCAGCAGCAACUCCAAAAUGUGCAGAGGCUGCAGCAAGAGAGUAGCCUGCAGGAGCUGCAUCAUCAGCUGAAUACACAGUUCGGG ....(((((((((.((.(((((..((.((.....)).))..))))).))..((((((((((.....).))))).)).)).))))))))).......... ( -35.70) >DroEre_CAF1 2232 99 - 1 GCGAGUGCUAAACAGCAACAACGCCUUCAGAACGUGCAGAGACUGCAGCACGAAAGCUGCCUUCAGGAAUUGCACAAUCAACUGAGCAGCCAGUUCGGA (((..((((....))))....))).........((((((...(((..((((....).)))...)))...))))))......((((((.....)))))). ( -29.00) >DroWil_CAF1 2306 96 - 1 GCUAGCAUUCAGCAGCAG---CAACUGCACAAUGUCCAGCGAUUGCAGCAGGAGAGCUGCCUGCAGGAGCUGCACCAGCAGCUUAGUGCUCAGUUUUCG (((.(((.((.((((...---...)))).....(.....))).))))))..((((((((...(((.(((((((....)))))))..))).)))))))). ( -37.90) >DroYak_CAF1 1897 99 - 1 GCGAGUGCUCAACAGCAACAACACCUUCAGAACGUGCAGAGACUGCAGCACGAAAGCUGCCUUCAGGAAUUGCACAAUCAACUGAGCAGCCAGUUUGGG .....((((....))))......((........((((((...(((..((((....).)))...)))...))))))....(((((......))))).)). ( -23.80) >DroPer_CAF1 2506 99 - 1 GCAAGUAUUCAGCAGCAGCAGCAACUCCAAAAUGUGCAGAGGCUGCAGCAAGAGAGUAGCCUGCAGGAGCUGCAUCAUCAGCUGAAUACACAGUUCGGG ....(((((((((.((.(((((..((.((.....)).))..))))).))..((((((((((.....).))))).)).)).))))))))).......... ( -35.70) >consensus GCGAGUACUCAACAGCAACAACAACUUCAGAACGUGCAGAGACUGCAGCACGAAAGCUGCCUGCAGGAACUGCACAAUCAGCUGAGCACCCAGUUCGGG ((..((.....)).)).................((((((...(((((((......)))))....))...))))))......((((((.....)))))). (-17.42 = -16.78 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:00 2006