Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 823,306 – 823,411 |
Length | 105 |
Max. P | 0.694600 |
Location | 823,306 – 823,411 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 73.44 |
Mean single sequence MFE | -33.92 |
Consensus MFE | -17.35 |
Energy contribution | -15.38 |
Covariance contribution | -1.97 |
Combinations/Pair | 1.59 |
Mean z-score | -1.69 |
Structure conservation index | 0.51 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.694600 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 823306 105 + 1281640 CGGGAAUGAGCUGCAGGAGCUGUUGAGCAUUGGGCAUUGGCGGCUGUAGGAAGGCCGGAAGGAACGGCAUCAAGUUUCCGGAAGAU--ACGGAAACUGCCUGUUGAU ((((..(((.(((((...(((((..(((.....)).)..))))))))))....((((.......)))).)))((((((((......--.)))))))).))))..... ( -39.00) >DroPse_CAF1 2739 99 + 1 CAGGCAUUAGUUGUAUCAGCUGCUGUGCA---GGUACUGGUGGACGCAGAAAAGCUGGAAGAAACGGUACCAAAUUGCCGGGACUA--ACAGCAGUUGCUUGAU--- ((((((...(((((.((((((.(((((((---(...))).....)))))...))))))......(((((......)))))......--)))))...))))))..--- ( -31.70) >DroEre_CAF1 2096 101 + 1 CGGGAAUUAGCUGCAGGAGCUGUUGAGCA---GGCAUUGGGGGCUGUAGGAAGGCCGGAAGGAAUGGCAUAAAGUUUCCGGAAUUU--ACGGAAACUGCCUGUUGC- .........((.(((((.((((((..(((---(.(......).)))).......((....))))))))....((((((((......--.)))))))).))))).))- ( -35.30) >DroWil_CAF1 2167 102 + 1 CGGGAAUCAGGUGCAUCAGUUGCUGUGCACUGGGCACUGGUGGGCGCAGGAAGGCUGGGAGGAAUGGUACCAAGUUUCCAGAGCUGGUUUGG-UGCUGC-UGCU--- (((..(((((.(((.(((((.((...))))))))))))))).(((((..((.((((.(((((..((....))..)))))..))))..))..)-)))).)-))..--- ( -34.60) >DroYak_CAF1 1761 101 + 1 CGGGAAUUAGCUGCAGGAGCUGUUGAGCA---GGAAUUGGGGGCUGUAGGAAGGCCGGAAGGAAUGGCAUCAAGUUUCCGGAAGUU--ACGGAACCUGCCUGUUGG- .......(((((.....)))))...((((---((....(((..((((((.....(((((((...((....))..)))))))...))--))))..))).))))))..- ( -31.20) >DroPer_CAF1 2370 99 + 1 CAGGCAUUAGUUGUAUCAGCUGCUGUGCA---GGUACUGGUGGACGCAGAAAAGCUGGAAGAAACGGUACCAAAUUGCCGGGACUA--ACAGCAGUUGCUUGAU--- ((((((...(((((.((((((.(((((((---(...))).....)))))...))))))......(((((......)))))......--)))))...))))))..--- ( -31.70) >consensus CGGGAAUUAGCUGCAGCAGCUGCUGAGCA___GGCACUGGUGGCCGCAGGAAGGCCGGAAGGAACGGCACCAAGUUUCCGGAACUU__ACGGAAGCUGCCUGUU___ ((((......((((.....(((((..((.....))...)))))..))))....((((.......))))....((((((((.........)))))))).))))..... (-17.35 = -15.38 + -1.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:59 2006