Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 808,378 – 808,495 |
Length | 117 |
Max. P | 0.729536 |
Location | 808,378 – 808,495 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 82.80 |
Mean single sequence MFE | -14.68 |
Consensus MFE | -10.77 |
Energy contribution | -11.43 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.90 |
Structure conservation index | 0.73 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729536 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 808378 117 + 1281640 CUUCAAAAACAAAAAACAAACAAAUGGCUUACAAUUACCAAACCCCAUAACUUGGGUUAAGGGAUCAUCUCACAAUUGAAAAAAAGUAAACUAUAGUACUAUCCUUCAGCACCAAAA .......................((((.................))))...(((((((.((((((....(((....))).....((((........)))))))))).))).)))).. ( -13.23) >DroSec_CAF1 19144 109 + 1 CUUCAA-------CAACAGACGAACGGUUAAAAAUUACCAAUUCCCAUAACUUGAGUUAAGGGAUCAUUUCACAAUUGAAACAAAGUUAACU-UACUACUUAUUUUCAUCUCAAAAA ......-------....(((.(((.(((........)))...((((.((((....)))).))))....))).....(((((..((((.....-....))))..))))))))...... ( -15.50) >DroSim_CAF1 22511 109 + 1 CUUCAA-------CAACAGACGAACGGUUUAAAAUUACCAAUUCCCAUAACUUGAGUUAAGGGAUCAUUUCACAAUUGAAACAAAGUUAACU-UACUACUUAUUUUCACCUCAAAAA ......-------........(((.(((........)))...((((.((((....)))).))))....))).....(((((..((((.....-....))))..)))))......... ( -15.30) >consensus CUUCAA_______CAACAGACGAACGGUUUAAAAUUACCAAUUCCCAUAACUUGAGUUAAGGGAUCAUUUCACAAUUGAAACAAAGUUAACU_UACUACUUAUUUUCACCUCAAAAA .(((((...................(((........)))...((((.((((....)))).))))...........)))))..................................... (-10.77 = -11.43 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:54 2006