Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 806,885 – 806,981 |
Length | 96 |
Max. P | 0.635128 |
Location | 806,885 – 806,981 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 77.22 |
Mean single sequence MFE | -21.30 |
Consensus MFE | -9.97 |
Energy contribution | -12.31 |
Covariance contribution | 2.34 |
Combinations/Pair | 1.24 |
Mean z-score | -2.02 |
Structure conservation index | 0.47 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635128 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 806885 96 - 1281640 CUCCUUCGCAGCAAAUAGUUUCAGAUUUGCAUUCAAAUAUCGACUCUGCGGAGCCUCCGCUUUCGGGUGAACAUACCCUACUUCAUCCGAACUUCU ...((((((((.....((((....(((((....)))))...))))))))))))........((((((((((..........))))))))))..... ( -24.80) >DroSec_CAF1 17864 96 - 1 CUCCUUCGCAGCAAAUAGUUUCAGAUAUGCAUUCAAAUAUCGACUCUGCGGAGCCUCCGCUUUUGGGUGAACAUACCCUACUUCAUCCGAACUUCU ...((((((((.....((((...(((((........)))))))))))))))))........((((((((((..........))))))))))..... ( -23.80) >DroSim_CAF1 21228 96 - 1 CUCCUUCGCAGCAAAUAGUUUCAGAUAUGCAUUCAAAUAUCGACUCUGCGGAGCCUCCGCUUUUGGGUGAACAUACCCUACUUCAUCCGAGCUUCU ...((((((((.....((((...(((((........))))))))))))))))).....((((..(((((((..........))))))))))).... ( -25.00) >DroEre_CAF1 18678 96 - 1 UUCCUUCGCAGGAUAUAGUUACAGAUAUGCAUUCUAAUAUCGAUUCUGCGGAGCCUCCGCCUUUGGGUAUACAAACCCGGCUUCAUCCGAACUUCU ...(((((((((((.........(((((........))))).))))))))))).....(((...((((......)))))))............... ( -26.10) >DroYak_CAF1 23018 96 - 1 CUCCUUCGCAGGAAAUAGUUUCAGAUAAGCAUUCAAAUAUGGAUUCUGCGGAUCCUCCGCCUUUGAGUGUAUAUACCCGGCUUCAUCCGAACUUCU .((((....))))...(((((..(((((((......(((((.((((.((((.....))))....)))).))))).....)))).))).)))))... ( -23.00) >DroMoj_CAF1 26315 81 - 1 CGACAUUACAGCGUGUUAUCUCUAAUUUGCACACAAAUAUUGAUUCCUCUGAGCCAAAACUU---------------CAUCAUCAAACCAACUUCU ........(((...(..(((....(((((....)))))...)))..).)))...........---------------................... ( -5.10) >consensus CUCCUUCGCAGCAAAUAGUUUCAGAUAUGCAUUCAAAUAUCGACUCUGCGGAGCCUCCGCUUUUGGGUGAACAUACCCUACUUCAUCCGAACUUCU ...((((((((.....((((...(((((........)))))))))))))))))........((((((((..............))))))))..... ( -9.97 = -12.31 + 2.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:53 2006