Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 792,633 – 792,734 |
Length | 101 |
Max. P | 0.585218 |
Location | 792,633 – 792,734 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 77.38 |
Mean single sequence MFE | -21.04 |
Consensus MFE | -15.68 |
Energy contribution | -15.27 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.27 |
Mean z-score | -0.91 |
Structure conservation index | 0.75 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585218 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 792633 101 + 1281640 UUA------AAUUCAA---UU-UUCC--CAGGAGAAUGGGUUACGCCUGAGCAGGCUCAACUCGCCCACAAUUUUCUUUACUCAGGAGGUAAAUGCUAAUAAU-GAAUCAAAUC-- ...------.((((((---((-(((.--...))))))(((((..((((....))))..)))))((.....(((((((......)))))))....))......)-))))......-- ( -20.20) >DroPse_CAF1 1531 99 + 1 UCU------AAUUUAA---AUUUUCU--CAGGAGAAUGGGUUACGCCUGAGCAGGCAGAGCUUGCCCACAAUUUCCUUUACUCAGGAGGUAAUUUAUAAUC----AAUUGAACU-- ...------....(((---(((.(((--(..(((...(((.......((.((((((...)))))).))......)))...)))..)))).)))))).....----.........-- ( -22.72) >DroEre_CAF1 2067 102 + 1 UGA------UAUUUAA---CUUUUCC--CAGGAGAAUGGGUUACGCCUGAGCAGGCUCAACUCGCCCACAAUUUUCUUUACUCAGGAGGUAAAUGAUAAUAAU-GAAAUAAAUC-- ...------((((((.---(((((..--.((((((((((((...((((....)))).......)))))...))))))).....))))).))))))........-..........-- ( -18.60) >DroWil_CAF1 1468 110 + 1 UGUAAUAAAAAUUAAA---CAUUUCCCUUAGGAGAAUGGGUUACGCCUGAACAGGCAGAACUUGCGCACAACUUCCUUUACUCAGGAGGUAAUUGACUAUAAU-AAAAUGAAAC-- .(((............---((((..((...))..))))((((..((((....))))..))))))).....(((((((......))))))).............-..........-- ( -21.80) >DroMoj_CAF1 3090 103 + 1 UCA------AAUUCAAUGUCU-UAUC--CAGGAGAAUGGGUUACACCUGAGCAGGCCGAACUUGCACACAACUUCCUUUACUCAGGAGGUAAUUUUUUAUAAAUAAAC----UCUC ...------...(((.(((..-.(((--((......))))).)))..)))(((((.....))))).....(((((((......)))))))..................----.... ( -20.20) >DroPer_CAF1 1534 99 + 1 UCU------AAUUUAA---AUUUUCU--CAGGAGAAUGGGUUACGCCUGAGCAGGCAGAGCUUGCCCACAAUUUCCUUUACUCAGGAGGUAAUUUAUAAUC----AAUUGAACU-- ...------....(((---(((.(((--(..(((...(((.......((.((((((...)))))).))......)))...)))..)))).)))))).....----.........-- ( -22.72) >consensus UCA______AAUUUAA___CUUUUCC__CAGGAGAAUGGGUUACGCCUGAGCAGGCAGAACUUGCCCACAAUUUCCUUUACUCAGGAGGUAAUUGAUAAUAAU__AAUUGAAUC__ ....................((((((....)))))).(((((..((((....))))..))))).......(((((((......))))))).......................... (-15.68 = -15.27 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:52 2006