Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 770,659 – 770,768 |
Length | 109 |
Max. P | 0.634449 |
Location | 770,659 – 770,768 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 94.80 |
Mean single sequence MFE | -29.27 |
Consensus MFE | -25.47 |
Energy contribution | -25.70 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.07 |
Mean z-score | -2.00 |
Structure conservation index | 0.87 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 770659 109 - 1281640 UCCAAGCGUCUUGCAGUACAUACACAGUAAGUGCGUUGGCAGUUAAGCUGAUGCGAGUUUUUCUAAGCAAUUUCCGACUGUCAGCGCUGAUGUAAAUCAAAAUGAUUCA .....(((((..((.((((.(((...))).))))((((((((((..((....))..((((....)))).......)))))))))))).))))).((((.....)))).. ( -30.20) >DroSim_CAF1 1519 109 - 1 UCUAAGCGUCUUGCAGUACAUACACAGUAAGUGCGUUGGCAGUUAAGCUGAUGCGAGAUUUUCUAAGCAAUUUCCGACUGUCAGCGCUGAUGUAAAUCAAAAUCAUUCA .....(((((..((.((((.(((...))).))))((((((((((..((....))((((((........)))))).)))))))))))).)))))................ ( -30.50) >DroYak_CAF1 1130 109 - 1 UACAAGUGUCUUGCAGUACAUACACAGUAAAUGCGUUGGCAGUUAAGCAGAUGCGAGUUUUUCUAAGCAAUUUCCAACUGUCAGCGCUGAUGUAAAUCAAAAUUAUUCA ((((.((((..((.....)).)))).......((((((((((((..((....))..((((....)))).......))))))))))))...))))............... ( -27.10) >consensus UCCAAGCGUCUUGCAGUACAUACACAGUAAGUGCGUUGGCAGUUAAGCUGAUGCGAGUUUUUCUAAGCAAUUUCCGACUGUCAGCGCUGAUGUAAAUCAAAAUCAUUCA .....(((((..((.((((.(((...))).))))((((((((((..((....))..((((....)))).......)))))))))))).)))))................ (-25.47 = -25.70 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:45 2006