Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 764,149 – 764,263 |
Length | 114 |
Max. P | 0.996443 |
Location | 764,149 – 764,263 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 90.74 |
Mean single sequence MFE | -23.12 |
Consensus MFE | -19.96 |
Energy contribution | -20.20 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.06 |
Mean z-score | -2.28 |
Structure conservation index | 0.86 |
SVM decision value | 2.70 |
SVM RNA-class probability | 0.996443 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 764149 114 + 1281640 AUGUGUCAUUUCACAAAGAGUUUUCCACUCAAAAACAUCGCAC--AUACGGCUAAAUGUUUUUACCUGCAUAAAUUAUAAGCGAAGUUUAUGCAAAAA-AAAGCUUGAAAUAAAAGU .((((......))))..(((((((......((((((((.((..--.....))...))))))))...((((((((((........))))))))))....-)))))))........... ( -21.30) >DroSec_CAF1 20672 113 + 1 AUGUGUCAUUUCACAAAGAGUUUUCCACUCAAAAACAUCGCAC--AUACGGCUAAAUGUUUUUACCUGCAUAAAUUAUAAGCGAAGUUUAUGCAAAA--AAAGCUUGACAUAAAAGU .(((((((.........((((.....))))((((((((.((..--.....))...))))))))...((((((((((........))))))))))...--......)))))))..... ( -24.30) >DroSim_CAF1 21135 113 + 1 AUGUGUCAUUUCACAAAGAGUUUUCCACUCAAAAACAUCGCAC--AUACGGCUAAAUGUUUUUACCUGCAUAAAUUAUAAGCGAAGUUUAUGCAAAA--AAAGCUUGACAUAAAAGU .(((((((.........((((.....))))((((((((.((..--.....))...))))))))...((((((((((........))))))))))...--......)))))))..... ( -24.30) >DroEre_CAF1 20009 117 + 1 AUGUGUCAUCCCACGAAGAGUUUUCCACUUAAAAACAUCGCAUCUGUACGGCUUAAUGUUUUUACCUGCAUAAAUUAUAAGCGAAGUUUAUGCAAAAGAAAAUGUUCAUAUUUAAAU ..(((......)))(((..((((((....(((((((((.((.........))...)))))))))..((((((((((........))))))))))...)))))).))).......... ( -22.10) >DroYak_CAF1 18297 114 + 1 AUGUGUCAUUUCACGAAGAGUUUUCCACUUAAAAACAUCGCAUUUGUACGGCCUAAUGUUUUUAACUGCAUAAAUUAUAAGCGAAGUUUAUGCAAAA---AAGCUUGACAUAAAAAU .(((((((..........((((((....((((((((((.((.........))...)))))))))).((((((((((........))))))))))..)---))))))))))))..... ( -23.60) >consensus AUGUGUCAUUUCACAAAGAGUUUUCCACUCAAAAACAUCGCAC__AUACGGCUAAAUGUUUUUACCUGCAUAAAUUAUAAGCGAAGUUUAUGCAAAA__AAAGCUUGACAUAAAAGU .(((((((.........((((.....))))((((((((.((.........))...))))))))...((((((((((........))))))))))...........)))))))..... (-19.96 = -20.20 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:44 2006