Locus 104

Sequence ID 4_DroMel_CAF1
Location 761,666 – 761,783
Length 117
Max. P 0.562059
window160

overview

Window 0

Location 761,666 – 761,783
Length 117
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 85.92
Mean single sequence MFE -24.53
Consensus MFE -16.88
Energy contribution -17.33
Covariance contribution 0.45
Combinations/Pair 1.14
Mean z-score -2.07
Structure conservation index 0.69
SVM decision value 0.06
SVM RNA-class probability 0.562059
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 761666 117 - 1281640
CAGCUGUGCUAAGUACAAAGAUGCAUCGUUCUAAGU---AUGUAGCUGUACGUCAAAUGUGAGACGCAAAGGCGUACACAUAAAAAACCUUUUUUUAAAUAAAAUAAGAAAGGAUGGAAA
...((((((((.((((..(((........)))..))---)).))))((((((((...((((...))))..)))))))).........((((((((..........))))))))))))... ( -26.80)
>DroSec_CAF1 18138 115 - 1
-----AUACUAAGUACAAAGAUGCAGCGUUCUAAGUACUAUGUAGCUGUACGUCAAAUGUAAGUCGCAAUGGCGUAAACACAAAAAACCUCCUUUUAAAUUAAAUACAAAAGGAUGGAAA
-----.(((..(((((..(((........)))..)))))..)))....(((((((..(((.....))).)))))))...........(((((((((...........))))))).))... ( -23.00)
>DroSim_CAF1 18573 115 - 1
-----AUACUAAGUACAUAGAUGCCGCGUUCUAAGUACUAUGUAGCUGUACGUCAAAUGUAAGUCGCAAUGGCGUUAUCACAAAAAACCUCCUUUUAAAUUAAAUACAAAAGGAUGGAAA
-----.(((..(((((.((((........)))).)))))..)))(.((.((((((..(((.....))).))))))...)))......(((((((((...........))))))).))... ( -23.80)
>consensus
_____AUACUAAGUACAAAGAUGCAGCGUUCUAAGUACUAUGUAGCUGUACGUCAAAUGUAAGUCGCAAUGGCGUAAACACAAAAAACCUCCUUUUAAAUUAAAUACAAAAGGAUGGAAA
......(((..(((((..(((........)))..)))))..)))....((((((...(((.....)))..))))))...........(((((((((...........))))))).))... (-16.88 = -17.33 +   0.45) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:40 2006