Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 747,259 – 747,364 |
Length | 105 |
Max. P | 0.712374 |
Location | 747,259 – 747,364 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 77.36 |
Mean single sequence MFE | -16.67 |
Consensus MFE | -10.13 |
Energy contribution | -11.13 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.81 |
Structure conservation index | 0.61 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 747259 105 - 1281640 GAAAAU-UUUUACAAACUUAACGUUUCCCAAAUGAGUAUUUAAAAAACUAUAGAAGUCCGACUCUUUUAAGGACAUUUAUAAAUUUUUAAGUGGACUGUAUGUACU ......-...((((.((....((((.....))))..((((((((((..((((((.((((...........)))).))))))..))))))))))....)).)))).. ( -17.60) >DroSec_CAF1 3902 81 - 1 GCAUAUUUUUUACAAACUUAUUGUUUCCCAAAUGAGUAUUUAAAAAACUAUAGAAGUCCCACCCUCUUAUGGACAUUUAUU------------------------- .....(((((((.(.(((((((........))))))).).)))))))..(((((.((((...........)))).))))).------------------------- ( -12.20) >DroSim_CAF1 3940 106 - 1 GCAUAUUUUUUACAAACUUAUUGUUUCCCAAAUGAGUAUUUAAAAAACUAUAGAAGUCCCACUCUCUUAUGGACAUUUAUUAAGUUUUAAAUGGACUGUAUGUACU ((((((..(((....(((((((........)))))))((((((((....(((((.((((...........)))).)))))....)))))))))))..))))))... ( -20.20) >consensus GCAUAUUUUUUACAAACUUAUUGUUUCCCAAAUGAGUAUUUAAAAAACUAUAGAAGUCCCACUCUCUUAUGGACAUUUAUUAA_UUUUAA_UGGACUGUAUGUACU .....(((((((.(.(((((((........))))))).).)))))))..(((((.((((...........)))).))))).......................... (-10.13 = -11.13 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:39 2006