| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 745,964 – 746,060 |
| Length | 96 |
| Max. P | 0.732251 |
| Location | 745,964 – 746,060 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.25 |
| Mean single sequence MFE | -33.33 |
| Consensus MFE | -25.09 |
| Energy contribution | -24.53 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732251 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 745964 96 + 1281640 ------------------------GCAUGGGGGUGGCUGAAGAUUUCGCUCCCAGCUUUGUUAAAAAGCCACAACUGCAUCAAGAAGAUGAUGGCAAUCGAUUGAUAUUUGAGUGCCAGC ------------------------((((((((((((.........)))))))))(((((.....)))))......)))((((......))))((((.((((.......)))).))))... ( -29.10) >DroGri_CAF1 2 103 + 1 -----------------UCCCUCAGCAUGGGGGUGGCUGAAGAUUUCGCUCCCAGCUUUGUGAAGAAGCCACAAUUGCAUCAGGAGGACGAUGGCAAUCGAUUGAUAUUUGAGUGCCAGC -----------------..(((((((.(((((((((.........))))))))))))(((((.......))))).........))))....(((((.((((.......)))).))))).. ( -34.80) >DroSec_CAF1 2666 119 + 1 ACGAAGCUUAAGA-AAAGCCCUCAGCAUGGGGGUGGCUGAAGAUUUCGCUCCCAGCUUUGUUAAAAAGCCACAACUGCAUCAAGAAGAUGAUGGCAAUCGAUUGAUAUUUGAGUGCCAGC .((((((((.((.-...((((((.....))))))..)).))).)))))......(((((.....)))))........((((.....)))).(((((.((((.......)))).))))).. ( -33.70) >DroWil_CAF1 5138 119 + 1 ACGAAGCAAAACG-AGAACCCUCAGCAUGGGGGUGGCUGAAGAUUUCGCUCCCAGCUUUGUUAAGAAGCCGCAACUGCAUCAGGAGGAUGACGGCAAUCGCCUCAUAUUUGAGUGCCAAC (((((((.....(-((....)))....(((((((((.........))))))))))))))))......((((((.((.(....).))..)).))))....((((((....)))).)).... ( -38.70) >DroMoj_CAF1 2 103 + 1 -----------------ACUCUCAGCAUGGGGGUGGCUGAAGAUUUCGCUCCCAGCUUUGUAAAGAAGCCACAGCUGCAUCAAGAAGAUGACGGUAAUCGGUUGAUAUUUGAAUGUCAGC -----------------.....((((.(((((((((.........)))))))))(((((.....)))))....))))((((.....))))..........((((((((....)))))))) ( -30.00) >DroAna_CAF1 283089 120 + 1 ACGAAGCUUAAACAAACGCCCUCAGCAUGGGGGUGGCUGAAGAUUUUGCUCCCAGCUUUAUCAAAAAGCCACAACUGCAUCAGGAGGAUGAUGGAAAUCGGUUAAUAUUUGAGUGUCAGA ..((.(((((((((..(((((((.....)))))))..))..((((((.......(((((.....)))))........(((((......)))))))))))........))))))).))... ( -33.70) >consensus _________________ACCCUCAGCAUGGGGGUGGCUGAAGAUUUCGCUCCCAGCUUUGUUAAAAAGCCACAACUGCAUCAAGAAGAUGAUGGCAAUCGAUUGAUAUUUGAGUGCCAGC ........................((((((((((((.........)))))))))(((((.....)))))......)))..............((((.((((.......)))).))))... (-25.09 = -24.53 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:38 2006