Locus 101

Sequence ID 4_DroMel_CAF1
Location 733,571 – 733,665
Length 94
Max. P 0.985966
window157

overview

Window 7

Location 733,571 – 733,665
Length 94
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 69.09
Mean single sequence MFE -28.30
Consensus MFE -13.46
Energy contribution -14.02
Covariance contribution 0.56
Combinations/Pair 1.12
Mean z-score -2.26
Structure conservation index 0.48
SVM decision value 2.02
SVM RNA-class probability 0.985966
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 733571 94 - 1281640
CCAAUCCG-----GCACCAGUUCCCGCUUUCCUGGAUUGCAUUCGUUUCCUUUGGGGACAACAAGUGCAUGCGCAAGCUGUACGCCAAAGGAUACCUUU--------
.(((((((-----(....(((....)))...)))))))).....((.(((((((((.....)..(((((.((....))))))).)))))))).))....-------- ( -32.90)
>DroSec_CAF1 21247 76 - 1
CCAAUCCG-----G------------------UGGAUUGCAUUCGUUUCCUUUGGGGACAACAAGUGCAUGCGCAAGCUGCACGCCAAAGGAUACCUUU--------
.((((((.-----.------------------.)))))).....((.(((((((((.....)..(((((.((....))))))).)))))))).))....-------- ( -30.00)
>DroSim_CAF1 9924 76 - 1
CCAAUCCG-----G------------------UGGAUUGCAUUCGUUUCCUUUGGGGACAACAAGUGCAUGCGCAAGCUGCACGCCGAAGGAUACCUUU--------
.((((((.-----.------------------.)))))).....((.(((((((((.....)..(((((.((....))))))).)))))))).))....-------- ( -29.70)
>DroEre_CAF1 22980 101 - 1
CCAAUCCG-----GAAACUGCGUCCGCUUU-CUGGAGAGCAUUCGCUUCCUUUGGGGACAACAAGUGCAUGCGCAAGCUUCACGCCAAAGGAAUCCUUUGCCAUGUG
....((((-----((((..((....)))))-)))))(.(((...(.((((((((((.....)..(((...((....))..))).))))))))).)...))))..... ( -33.20)
>DroYak_CAF1 30127 94 - 1
CCAAUCCG-----GAAACUGAGCCCGCUUUACUGGAGAGCAUUCGUUUCCUUUGGGGACAACAAGUGCAUGCGCAAGCUUCAAGCCAAAGGAAACCUUU--------
....((.(-----....).))....(((((.....)))))....((((((((((((.((.....)).)..((....))......)))))))))))....-------- ( -28.80)
>DroPer_CAF1 25422 84 - 1
AAUAUCUGGGCUUAAAGCUAAGUAAUCU-------CUAGCAGUCAUUUCUUU---GGACAACAAGUGCA-GCGCAG----CAAGGAAAUGGAAGAUUUA--------
...((((.........((((((....))-------.))))..((((((((((---(.((.....))((.-..))..----))))))))))).))))...-------- ( -15.20)
>consensus
CCAAUCCG_____GAA_CUG_G_CCGCU____UGGAUAGCAUUCGUUUCCUUUGGGGACAACAAGUGCAUGCGCAAGCUGCACGCCAAAGGAAACCUUU________
....(((...............................(((((.((((((.....))).))).)))))..((....))...........)))............... (-13.46 = -14.02 +   0.56) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:37 2006