Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 154,725 – 154,832 |
Length | 107 |
Max. P | 0.837038 |
Location | 154,725 – 154,832 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 84.45 |
Mean single sequence MFE | -29.40 |
Consensus MFE | -20.41 |
Energy contribution | -21.72 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.12 |
Mean z-score | -2.04 |
Structure conservation index | 0.69 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837038 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 154725 107 + 1281640 AAGUGUCGAAGAAUUUA-UAAUUGCCUUCACUUGUAAUUUUAAAUUGUUCAGAAAUGUUCGCAAGUCAGAGCAAGGCUUGUGA---------UUCUCCGAGUGAGACUGUGCACCUA .(((.(((((.((((((-.((((((........)))))).)))))).)))((((....(((((((((.......)))))))))---------))))......)).)))......... ( -27.30) >DroSec_CAF1 29290 116 + 1 AACUGUCGCAGAAUUCA-UAAUUGCCUGCACUUGUAAUUUUAAAUUGUCCAGAAAUGUUCGCAAGUCAGAGCAAGGCUUGUGAGAUUAAUAAUUCUCGAAGUGAGACAGUGCAGCUA .((((((..........-...(((((((.(((((((((.....)))(..((....))..)))))))))).)))).((((.(((((........)))))))))..))))))....... ( -30.30) >DroEre_CAF1 16490 117 + 1 AGCUGUCGCAGAAUUAAAUAUUUGCUUGCCUUUGUAAUUUUAAAUUGUUCAGAAAUGUUCACAAGUCAGAGCAAGGCGUGUGAGAUUACCAAUUCUCAAAAUGAAACAGUGCAGCUA (((((.(((..............((.((((((((......))))((((((.((..((....))..)).)))))))))).))((((........))))...........)))))))). ( -27.50) >DroYak_CAF1 16648 117 + 1 AGCUGUCGCAGAACUAAAAAGUUGCCUUCCUUUGUAAUUUUAAAUUGUUCAGAAAUGUUCACAAGUCAGAGCAAGGCUUGUGAGAUUACUAAUUCUCAAAGUGAGACAGUACAGCUA ((((((.((.((((...((((((((........)))))))).....))))((.(((.((((((((((.......))))))))))))).))...((((.....))))..)))))))). ( -32.50) >consensus AACUGUCGCAGAAUUAA_UAAUUGCCUGCACUUGUAAUUUUAAAUUGUUCAGAAAUGUUCACAAGUCAGAGCAAGGCUUGUGAGAUUACUAAUUCUCAAAGUGAGACAGUGCAGCUA (((((.(((.((((.....((((((........)))))).......)))).......((((((((((.......)))))))))).........((((.....))))..)))))))). (-20.41 = -21.72 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:02 2006