Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 79,520 – 79,621 |
Length | 101 |
Max. P | 0.904458 |
Location | 79,520 – 79,621 |
---|---|
Length | 101 |
pre Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.74 |
Mean single sequence MFE | -25.93 |
Consensus MFE | -14.25 |
Energy contribution | -15.12 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.21 |
Mean z-score | -2.42 |
Structure conservation index | 0.55 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.904458 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 79520 101 - 1281640 CGAUACCAGAUUCAAUCCUGCUGUGCACUUGCAGGAAAAAUGUUAUUUUUCUUGUUUUAAUGCCGGACAAGGAUAC--ACCAUACACAUC-UACAUAUGUAU-GU--------------- ..............(((((.(((.(((...(((((((((((...))))))))))).....))))))...)))))..--..((((((.((.-...)).)))))-).--------------- ( -24.50) >DroSec_CAF1 22675 102 - 1 CGAUACCAGAUUUAAUCCUGCUGUGCACUUGCAGGAAAAAUGUUAUUUUU-UUGUUUUAAUGCCGGACAAGGAUACACACCAUACACAUC-UACAUAUGUAU-GU--------------- ..............(((((.(((.(((...(((((((((......)))))-)))).....))))))...)))))......((((((.((.-...)).)))))-).--------------- ( -20.90) >DroEre_CAF1 37589 117 - 1 CGAUACAAUACUCAAUCCUGCUGUGCACUUGCAGGAAAAAUGUUAUUUUUCCGCUUUUAAAGCCGGACAGAAAUACACA---CCCACACCAUACACAUGUAUUGUAUAUAUAUAUAUAUG ..(((((((((....((((((.........))))))....(((((((((((((((.....)).))))..)))))).)))---................)))))))))............. ( -26.80) >DroYak_CAF1 43015 108 - 1 CGAAACCCUAUUCAAUCCUGCUGUGCACUUGCAGGAAAAAUGUUAUUUUUCUGGUUUUAAGGCUGGACAGGGAUACACA---CACACAGCAUACAUAUGUAUUGUGUGUAG--------- .....((((......((((((.........)))))).............((..(((....)))..)).)))).((((((---((....((((....))))..)))))))).--------- ( -31.50) >consensus CGAUACCAGAUUCAAUCCUGCUGUGCACUUGCAGGAAAAAUGUUAUUUUUCUGGUUUUAAUGCCGGACAAGGAUACACA___CACACAUC_UACAUAUGUAU_GU_______________ ((((((.........((((((.........)))))).......((((((((((((......))))))..)))))).......................))))))................ (-14.25 = -15.12 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:46 2006