| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,772,187 – 26,772,304 |
| Length | 117 |
| Max. P | 0.698665 |
| Location | 26,772,187 – 26,772,304 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 69.70 |
| Mean single sequence MFE | -28.82 |
| Consensus MFE | -11.71 |
| Energy contribution | -13.40 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.698665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26772187 117 - 27905053 AUCUACUCAUAUCGGAGUUCCCAUCCCA---GUAAUUCAUGUGUAUUAAUACACAUCCUUAGGAAUCAGAAUGGCAGCACUCAGUGUCCUUAUAAAUUAGGAUGGCAGCAUCCGAUAUCC ........(((((((((((.((((((..---((.((((.((((((....))))))(((...)))....)))).)).((((...))))............)))))).))).)))))))).. ( -33.80) >DroSec_CAF1 75869 103 - 1 UUCUACUCAUAUCAGAGUUCUCAUCCCGAUUGUAA--------------UACACAUCCUUAACUAUAAGAAUGGCAGCACUCAGAAUCCUUAUAAAUUGGGGUGGCAGCGCCCGGAA--- ....((((......)))).....(((.((.(((..--------------....(((.((((....)))).)))...))).)).................(((((....)))))))).--- ( -18.30) >DroSim_CAF1 79581 120 - 1 UUCUAUUCAUAUCAGAGUUCUCAUCCCGAUUGUAAUAAAUGUGUAUUAAUACACAUCCAUAAGAAUAAGAAUGGCAGCACUCAGCAUCCUUAUAAAUUGGGGUGGCAGCACCCGAUAGCC .........((((.(.(((.(((((((((((.......(((((((....)))))))........(((((....((........))...))))).))))))))))).))).)..))))... ( -27.60) >DroEre_CAF1 77192 99 - 1 UUCUACACAUAUCGGAGUUCCCAACCCGAUGUUUA--------------U--ACAUCCUGAGAAAUCGGGAUGGCAGCCCUCGAUGUCCCUAGAAAUCAGGAUGCCAACUGUGGA----- .((((((.(((((((.((.....)))))))))...--------------.--..(((((((....)))))))((((..(((.(((.((....)).)))))).))))...))))))----- ( -35.60) >consensus UUCUACUCAUAUCAGAGUUCCCAUCCCGAUUGUAA______________UACACAUCCUUAAGAAUAAGAAUGGCAGCACUCAGUAUCCUUAUAAAUUAGGAUGGCAGCACCCGAUA___ ................(((.(((((((((((......................(((.((((....)))).)))...((.....)).........))))))))))).)))........... (-11.71 = -13.40 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:42 2006