Locus 9997

Sequence ID 3R_DroMel_CAF1
Location 26,771,290 – 26,771,382
Length 92
Max. P 0.897834
window15936

overview

Window 6

Location 26,771,290 – 26,771,382
Length 92
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 73.58
Mean single sequence MFE -34.12
Consensus MFE -19.63
Energy contribution -21.07
Covariance contribution 1.44
Combinations/Pair 1.12
Mean z-score -1.87
Structure conservation index 0.58
SVM decision value 1.00
SVM RNA-class probability 0.897834
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26771290 92 - 27905053
AGUG---GGCACGCAACAAAAGUUUGUGUGCACUGAAUCAUAAUUAAAGGGGGGUCCUCCCCCACCC--------ACCACCCAGC-----------AAAAGGGGGGUUGUUCGA
((((---.(((((.(((....)))))))).))))((((.((........(((((....)))))....--------.((.(((...-----------....))))))).)))).. ( -32.00)
>DroSim_CAF1 78680 100 - 1
AGUG---GGCACGCAACAAAAGUUUGUGUGCACUGAAUCAUAAUUAAAGGGGGGGCCUCCCCCUGCCCCUGCCCCCGCCCCUAGC-----------AAAAGGGGGGUUGUUCGA
((((---.(((((.(((....)))))))).))))((((..........((((((((........)))))..)))((.(((((...-----------...)))))))..)))).. ( -38.00)
>DroEre_CAF1 76351 95 - 1
AGUG---AGCACGCAACAAAAGCUUGUGUGCACUGAAUCAUAAUUAAAGGGGGGCCUG--CCG--------------CCCCUGGCAAAAGGGGGCCAAAUGGGGGGUCGUUCGA
....---.((((((((.......)))))))).................(((.(((((.--(((--------------(((((.......)))))).....)).))))).))).. ( -35.70)
>DroYak_CAF1 77897 95 - 1
AGUG---GGCACGCAACAAAAGUUUGUGUGCACUGAAUCAUAAUUAAAGGGCGGGCUUCUCCC--------------CCCCUGGAAAAAG--UGCCAAAAGGGGGGUCGUUCGA
((((---.(((((.(((....)))))))).)))).................(((((....(((--------------(((.(((......--..)))...))))))..))))). ( -32.40)
>DroAna_CAF1 85852 97 - 1
AGCGAGAGGCACGCAACAAAAGUUUGUGUGCACUGAAUCAUAAUUAAAGGGGGGAGCCAUCCCCGCC------------UCUGGGU---C--UGCCGCCAUGGGGGUUGUUCGA
..((((((((((((((.......)))))))).))................(((((....)))))(((------------(((((((---.--....))).)))))))..)))). ( -32.50)
>consensus
AGUG___GGCACGCAACAAAAGUUUGUGUGCACUGAAUCAUAAUUAAAGGGGGGGCCUCCCCC__CC__________CCCCUGGC________GCCAAAAGGGGGGUUGUUCGA
........((((((((.......))))))))..(((((.((.......(((((.....)))))..............(((((..................))))))).))))). (-19.63 = -21.07 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:41 2006