| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,767,994 – 26,768,101 |
| Length | 107 |
| Max. P | 0.781370 |
| Location | 26,767,994 – 26,768,101 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 77.21 |
| Mean single sequence MFE | -24.24 |
| Consensus MFE | -17.35 |
| Energy contribution | -18.33 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.781370 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26767994 107 - 27905053 UAUUCUGCAUACGCAUAAAUAAACUUGGAACGUGCUCGAAAGCACACAGCUGAAUGCAGCCCGCACUCAC------------ACACACAAAGGGGCUGAAAGGACGUGUGCAUCCUUGC .....(((((((((..........(..(...(((((....)))))....)..)...((((((........------------..........))))))....).))))))))....... ( -28.17) >DroSec_CAF1 71741 111 - 1 UAUUCUGCAUACGCAUAAAUAAACUUGAAACGUGCUCGAAAGCACACAGCUGAAUGCAGCCCGCACCCACAC--------ACACACACAAAGGGGCUGAAAGGACGUGUGCAUCCUUGC .....(((((((((.................(((((....))))).((((....(((.....)))(((....--------...........)))))))....).))))))))....... ( -28.36) >DroEre_CAF1 73066 109 - 1 UAUUCUGCAUACGCAUAAAUAAACUUGGAACGUGCUCGAAAGCACACAGCUGAAUGCAGCCCACACACCA----------ACACACACAAAGGGGCUGAAAGGACGUGUGCAUCCUUGC .....(((((((((..........(..(...(((((....)))))....)..)...((((((........----------............))))))....).))))))))....... ( -27.85) >DroYak_CAF1 74439 119 - 1 UAUUCUGCAUACGCAUAAAUAAACUUGGAACGUGCUCGAAAGCACACAGCUGAAUGCAGCUCACACACACACAGUUACACACACAGACAAAGGGGCUGAAAGGACGUGUGCAUCCUUGC .....(((((((((.................(((((....)))))..(((((....)))))..........((((..(.............)..))))....).))))))))....... ( -26.72) >DroMoj_CAF1 79549 84 - 1 UAUUCUGCAUACGCAUAAAUAAACUUG-AACGUGCUCGAGAGCACA---GUAAAUGCAACACCCACACACAC------------GCA-----------------CAUGUACAUCCCC-- .....(((((..((.............-...(((((....))))).---((....))...............------------)).-----------------.))))).......-- ( -11.90) >DroAna_CAF1 82340 99 - 1 UAUUCUGCAUACGCAUAAAUAAACUUG-AACGUGCUCGAAAGCA--CAGUUGAAUGCAACGCACACAC--------------AGAUACAA-GCGGUUGCAC--AUGUAUGUGUCCUUUU ......(((((..(((........((.-((((((((....))))--).))).))((((((((......--------------........-)).)))))).--)))..)))))...... ( -22.44) >consensus UAUUCUGCAUACGCAUAAAUAAACUUGGAACGUGCUCGAAAGCACACAGCUGAAUGCAGCCCACACACAC____________ACACACAAAGGGGCUGAAAGGACGUGUGCAUCCUUGC .....((((((((..................(((((....)))))...........((((((..............................))))))......))))))))....... (-17.35 = -18.33 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:38 2006