| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,766,001 – 26,766,101 |
| Length | 100 |
| Max. P | 0.793292 |
| Location | 26,766,001 – 26,766,101 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.74 |
| Mean single sequence MFE | -22.54 |
| Consensus MFE | -11.23 |
| Energy contribution | -11.25 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.793292 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26766001 100 + 27905053 U-------------UUCCUUGGC---U--AGAUUGUCAACAUAUUAGCUUCAAAUUGCUAAAGUUCUGCGACUUUUGCUGUUGCCUCAUUUUCUCGCUCACGCACAGCAGCAAUCGCC .-------------....(((((---.--.....)))))....(((((........)))))......((((...(((((((((.....................))))))))))))). ( -22.80) >DroVir_CAF1 87353 87 + 1 -----------------CGCCGC---UAGAGAUUGUCAACAUAUUAGCUUCAAAUUGCUAAAGUUCUGCGACUUUUGCUGUUGCCUCAUUUUCUCUCGCACGCACAC----------- -----------------.((.((---.(((((.((.(((((..(((((........)))))......((((...)))))))))...))...))))).))..))....----------- ( -20.60) >DroWil_CAF1 82568 99 + 1 C--------------AUCGUAGC---U--AGAUUGUCAACAUAUUAGCUUCAAAUUGCUAAAGUUCUGCGACUUUUGAUGUUGCCUCAUUUUCCCUGGCACGCACUCUGCCAAUAGCU .--------------...(.(((---(--((..((....))..)))))).).....((((.......(((((.......)))))...........(((((.......))))).)))). ( -20.90) >DroYak_CAF1 72409 113 + 1 CCCGCUCCCAUGUUCUCCUUGGC---U--AGAUUGUCAACAUAUUAGCUUCAAAUUGCUAAAGUUCUGCGACUUUUGCUGUUGCCUCAUUUUCUCGCUCACGCACAGCAGCUAUCUCC ..(((.............(((((---.--.....)))))....(((((........)))))......)))....(((((((.((.................)))))))))........ ( -20.43) >DroMoj_CAF1 77804 88 + 1 -----------------CAGCGUGCGCAGAGAUUGUCAACAUAUUAGCUUCAAAUUGCUAAAGUUCUGCGACUUUUGCUGUUGCCUCAUUUUCUCUUGCACGCAU------------- -----------------..(((((((.(((((.((.(((((..(((((........)))))......((((...)))))))))...))...))))))))))))..------------- ( -29.40) >DroAna_CAF1 80218 99 + 1 C--------------AUCCUGGC---U--AGAUUGUCAACAUAUUAGCUUCAAAUUGCUAAAGUUCUGCGACUUUUGCUGUUGCCUCAUUUUCUCACGCACGCAUAGCAGCAGCCACU .--------------....((((---(--.((..(((......(((((........))))).(.....))))..))((((((((.................)))..)))))))))).. ( -21.13) >consensus C________________CGUGGC___U__AGAUUGUCAACAUAUUAGCUUCAAAUUGCUAAAGUUCUGCGACUUUUGCUGUUGCCUCAUUUUCUCUCGCACGCACAGCAGCAAUC_C_ .....................((......(((..((.......(((((........)))))......(((((.......)))))...))..))).......))............... (-11.23 = -11.25 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:33 2006