| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,764,078 – 26,764,181 |
| Length | 103 |
| Max. P | 0.693118 |
| Location | 26,764,078 – 26,764,181 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.44 |
| Mean single sequence MFE | -29.38 |
| Consensus MFE | -7.03 |
| Energy contribution | -7.03 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.24 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.693118 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26764078 103 - 27905053 GAGGGGAAACUAUCCUGUUUUG-GGGAUCUUUAUCAGG-----GUGACCCAAUAAUUAUGAC-UUCUCUUCCAGUUGAGAUAUAUCUACACUC----GGUUAUCUACUUUGA------AA ((((((((...(((((......-)))))..((((..((-----....))..)))).......-))))))))(((...(((((.(((.......----))))))))...))).------.. ( -22.30) >DroSec_CAF1 67873 112 - 1 GAGGGGAAACUAUCCAGUUUUG-GGGAUCUUUAUCAGGGUAGGGUGACCCAAUAAUUAUGAC-UUUCGUUGCAGUUGGGAUAUAUCUGAACUGGGUGGGUUAUCUACUUUGA------AA ...((....))((((.......-.)))).....((((((((((.(((((((........(((-....))).(((((.(((....))).)))))..)))))))))))))))))------.. ( -35.10) >DroSim_CAF1 71540 107 - 1 GAGGAGAAACUAUCCAGUUUUG-GGGAUCUUUAUCAGG-----GUGACCCAAUAAUUAUGAC-UUUCGUUGCAGUUGGGAUAUAUCUGAACUGGGUGGGUUAUCUACUUUGA------AA (((((((..(((((((((((.(-(..((((......((-----....))...(((((..(((-....)))..)))))))))...)).)))))))))))....))).))))..------.. ( -29.20) >DroEre_CAF1 69145 110 - 1 GAAGGGAAACUAUCCUGUUUGG-GGGAUCCUUGACAGG-----GUUACCCGAUAAUUGUGCGCUCUAAAUUCAGUUGGGAUAUAUCUAAACGG----GUUCACAUACCUUGGCGCACAAA ...(((.....((((((((.((-(....))).))))))-----))..))).....(((((((((.........(((.(((....))).)))((----((......)))).))))))))). ( -37.80) >DroYak_CAF1 70559 94 - 1 GAGGGGAAACUAUCCUGUUUGCAAGGAUCCUUAUCAGG-----GUUACCCAAUAAUGGUGCUCUUUAA--UAAGUUGG-------------------GUUUAUCCACUUUGGCAUACAAA ((.((....)).)).(((.((((((....)))....((-----((.(((((((....((........)--)..)))))-------------------))..))))......))).))).. ( -22.50) >consensus GAGGGGAAACUAUCCUGUUUUG_GGGAUCUUUAUCAGG_____GUGACCCAAUAAUUAUGAC_UUUAAUUGCAGUUGGGAUAUAUCUAAACUG____GGUUAUCUACUUUGA______AA ..(((((.....((((.......)))))))))...............((((((....................))))))......................................... ( -7.03 = -7.03 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:31 2006