Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,186,441 – 3,186,532 |
Length | 91 |
Max. P | 0.984590 |
Location | 3,186,441 – 3,186,532 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 91.93 |
Mean single sequence MFE | -31.62 |
Consensus MFE | -27.88 |
Energy contribution | -28.25 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.07 |
Mean z-score | -1.50 |
Structure conservation index | 0.88 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677378 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3186441 91 + 27905053 --------CGCAGCAGCUGGAGGAGCUGGAGGAGAUUCGGCCAUGAGAAUGCAGAUUCCCGCUGCUGCUCCAUGUUGGCUGCAUAAAAACGAAGGAAUU --------.(((((((((((((.(((.((.((.((.((.((.((....)))).)).)))).))))).))))).))).))))).......(....).... ( -33.60) >DroSec_CAF1 5949 91 + 1 --------CGCAGCAGCUGUAGGAGCUGGAGGAGAUUCGACCAUGAGAAUGCAGAUUCCCGCUGCUGCUCCAUGUUGGCUGCAUAAAAACGCAGGAAUU --------..(((((...((((.(((.((((..(((((........)))).)...)))).))).))))....))))).((((........))))..... ( -27.90) >DroSim_CAF1 12506 91 + 1 --------CGCAGCAGCUGUAGGAGCUGGAGGAGAUUCGACCAUGAGAAUGCAGAUUCCCGCUGCUGCUCCAUGUUGGCUGCAUAAAAACGCAGGAAUU --------..(((((...((((.(((.((((..(((((........)))).)...)))).))).))))....))))).((((........))))..... ( -27.90) >DroEre_CAF1 7318 99 + 1 GGAGCAGCUGGAGCGGCUGGAGGAGCUGGAGGAGGUUCGACCAUGAGAAUGCAGAUUCCCGCUGCUGCUCCAUGUUGGCUGCAUAAAAACGCAGGAAUU ((((((((...(((((.(((..(((((......)))))..)))...((((....))))))))))))))))).......((((........))))..... ( -37.10) >consensus ________CGCAGCAGCUGGAGGAGCUGGAGGAGAUUCGACCAUGAGAAUGCAGAUUCCCGCUGCUGCUCCAUGUUGGCUGCAUAAAAACGCAGGAAUU .........(((((((((((((.(((.((.((.((.((...(((....)))..)).)))).))))).))))).))).)))))................. (-27.88 = -28.25 + 0.38)
Location | 3,186,441 – 3,186,532 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 91.93 |
Mean single sequence MFE | -30.85 |
Consensus MFE | -27.08 |
Energy contribution | -27.82 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.62 |
Structure conservation index | 0.88 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3186441 91 - 27905053 AAUUCCUUCGUUUUUAUGCAGCCAACAUGGAGCAGCAGCGGGAAUCUGCAUUCUCAUGGCCGAAUCUCCUCCAGCUCCUCCAGCUGCUGCG-------- .................(((((.....(((((.(((...((((((....)))))).(((..(.....)..)))))).)))))...))))).-------- ( -27.00) >DroSec_CAF1 5949 91 - 1 AAUUCCUGCGUUUUUAUGCAGCCAACAUGGAGCAGCAGCGGGAAUCUGCAUUCUCAUGGUCGAAUCUCCUCCAGCUCCUACAGCUGCUGCG-------- .....((((((....))))))((.....)).((((((((((((((....)))))).(((..(.....)..))).........)))))))).-------- ( -32.00) >DroSim_CAF1 12506 91 - 1 AAUUCCUGCGUUUUUAUGCAGCCAACAUGGAGCAGCAGCGGGAAUCUGCAUUCUCAUGGUCGAAUCUCCUCCAGCUCCUACAGCUGCUGCG-------- .....((((((....))))))((.....)).((((((((((((((....)))))).(((..(.....)..))).........)))))))).-------- ( -32.00) >DroEre_CAF1 7318 99 - 1 AAUUCCUGCGUUUUUAUGCAGCCAACAUGGAGCAGCAGCGGGAAUCUGCAUUCUCAUGGUCGAACCUCCUCCAGCUCCUCCAGCCGCUCCAGCUGCUCC .....((((((....)))))).......(((((((((((((((((....))))...(((..((.(........).))..))).)))))...)))))))) ( -32.40) >consensus AAUUCCUGCGUUUUUAUGCAGCCAACAUGGAGCAGCAGCGGGAAUCUGCAUUCUCAUGGUCGAAUCUCCUCCAGCUCCUACAGCUGCUGCG________ .....((((((....))))))((.....)).((((((((((((((....)))))).(((..(.....)..))).........))))))))......... (-27.08 = -27.82 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:01 2006