Locus 9988

Sequence ID 3R_DroMel_CAF1
Location 26,744,027 – 26,744,126
Length 99
Max. P 0.866074
window15920

overview

Window 0

Location 26,744,027 – 26,744,126
Length 99
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 74.95
Mean single sequence MFE -23.37
Consensus MFE -14.54
Energy contribution -13.10
Covariance contribution -1.44
Combinations/Pair 1.36
Mean z-score -1.60
Structure conservation index 0.62
SVM decision value 0.85
SVM RNA-class probability 0.866074
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26744027 99 + 27905053
CCCGUUUUCCCCCGAUUUUCCCCCUUGUCGUCGUUAUUGUUUACGCUCUUGUUUAAAUAAUGGCCACGCAACGUGAUUCUGCUCCUGCCGCCGGUUGG--C
........((.(((..........(((.(((.(((((((((((.((....)).))))))))))).)))))).(((.....((....))))))))..))--. ( -19.80)
>DroVir_CAF1 60923 83 + 1
-----UUGUUGCCAAUUGUUGGUGUUGUUGUCGUUAUUGUUUACGCUCUUGUUUAAAUAAUGGUUGCACAACGUGC--CC------GCAGCU---UGG--A
-----......((((((((.((((((((.((..((((((((((.((....)).))))))))))..)))))))..))--).------)))).)---)))--. ( -25.20)
>DroPse_CAF1 57491 95 + 1
C------UCCUCUUGUUGUUCCUGUUGUUCUCGUUAUUGUUUACGCUCUUGUUUAAAUAAUGGCCAGGCAACGUGCCUCUGCUUCUGCUGCAGCCAGGGCC
.------................(((((.((.(((((((((((.((....)).))))))))))).)))))))..((((((((.......))))...)))). ( -26.40)
>DroSec_CAF1 47983 99 + 1
CCCCGCUUUCCCUGAUUUUCCCCCUUGUCGUCGUUAUUGUUUACGCUCUUGUUUAAAUAAUGGCCACGCAACGUGAUUCUGCUCCUGCUGCCGGUUGG--C
....(((..((.............(((.(((.(((((((((((.((....)).))))))))))).)))))).........((....))....))..))--) ( -21.20)
>DroEre_CAF1 49170 99 + 1
CCCAAUUCUCCCAGAUUCUCCCCCUUGUUGUCGUUAUUGUUUACGCUCUUGUUUAAAUAAUGGCCACGCAACGUGAUUCUGCUCCUCCUGCCAGUUGG--C
...........((((.((.......((((((.(((((((((((.((....)).)))))))))))...)))))).)).))))........(((....))--) ( -21.20)
>DroPer_CAF1 55670 95 + 1
C------UCCUCUUGUUGUUCCUGUUGUUCUCGUUAUUGUUUACGCUCUUGUUUAAAUAAUGGCCAGGCAACGUGCCUCUGCUUCUGCUGCAGCCAGGGCC
.------................(((((.((.(((((((((((.((....)).))))))))))).)))))))..((((((((.......))))...)))). ( -26.40)
>consensus
C____UUUCCCCUGAUUGUCCCCCUUGUUGUCGUUAUUGUUUACGCUCUUGUUUAAAUAAUGGCCACGCAACGUGAUUCUGCUCCUGCUGCCGGUUGG__C
...........((((.........(((.(((.(((((((((((.((....)).))))))))))).)))))).........((.......))...))))... (-14.54 = -13.10 +  -1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:27 2006