Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 26,740,471 – 26,740,568 |
Length | 97 |
Max. P | 0.877676 |
Location | 26,740,471 – 26,740,568 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 81.36 |
Mean single sequence MFE | -23.89 |
Consensus MFE | -17.22 |
Energy contribution | -17.55 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.26 |
Structure conservation index | 0.72 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877676 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26740471 97 + 27905053 ---UGCC--UAUUAU--UAUUGCUGUU-GAACAACCGCAAAUGGAUUUAACAUUACAGCCGCACUAAUCCACUGGGGAUCAAGUGGAGAUCAAGCGGCAUUAUCA ---....--......--...(((.(((-....))).)))((((.......))))...(((((.....((((((........))))))......)))))....... ( -25.00) >DroVir_CAF1 56811 88 + 1 -----------------UAUUGUUAUUAAAACAACCACAAGGCAAUUUAAUAUUACAGCCGCACUAAUCCACUGGGGAUCAAGUGCAGAUCAAGCGGCAUUAUCA -----------------...((((((((((....((....))...)))))))..)))(((((......((....))((((.......))))..)))))....... ( -18.60) >DroPse_CAF1 54158 82 + 1 -----------------------UGUGGGGACAACCGCAAAUGGAUUUAAUAUUACAGCCGCACUAAUCCACUGGGGAUCAAGUGGAGAUCAAGCGGCAUUAUCA -----------------------(((((......)))))..................(((((.....((((((........))))))......)))))....... ( -26.20) >DroGri_CAF1 64425 88 + 1 -----------------UAUUGUUAUUAAAACAACCGCAAGGCAAUUUAAUAUUACAGCCGCACUAAUCCACUAGGGAUCAAGUGCAGAUCAAGCGGCAUUAUCA -----------------..(((((.....)))))((((..(((..............)))(((((.((((.....))))..))))).......))))........ ( -22.64) >DroAna_CAF1 53399 104 + 1 UGCUGCCGUUAUUAUUGUAUUAUUGUU-GAACAACCGCAAAUGGAUUUAAUAUUACAGCCGCACUAAUCCACUGGGGAUCAAGUGGAGAUCAAGCGGCAUUAUCA ...............((((....((((-(((...(((....))).))))))).))))(((((.....((((((........))))))......)))))....... ( -24.70) >DroPer_CAF1 52273 82 + 1 -----------------------UGUGGGGACAACCGCAAAUGGAUUUAAUAUUACAGCCGCACUAAUCCACUGGGGAUCAAGUGGAGAUCAAGCGGCAUUAUCA -----------------------(((((......)))))..................(((((.....((((((........))))))......)))))....... ( -26.20) >consensus _________________UAUUGUUGUU_GAACAACCGCAAAUGGAUUUAAUAUUACAGCCGCACUAAUCCACUGGGGAUCAAGUGGAGAUCAAGCGGCAUUAUCA .........................................................(((((.....((((((........))))))......)))))....... (-17.22 = -17.55 + 0.33)
Location | 26,740,471 – 26,740,568 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 81.36 |
Mean single sequence MFE | -24.01 |
Consensus MFE | -19.08 |
Energy contribution | -18.72 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.07 |
Mean z-score | -1.99 |
Structure conservation index | 0.79 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871958 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26740471 97 - 27905053 UGAUAAUGCCGCUUGAUCUCCACUUGAUCCCCAGUGGAUUAGUGCGGCUGUAAUGUUAAAUCCAUUUGCGGUUGUUC-AACAGCAAUA--AUAAUA--GGCA--- ......((((((((((..((((((.(....).)))))))))).)).(((((..((...(((((....).))))...)-))))))....--......--))))--- ( -24.00) >DroVir_CAF1 56811 88 - 1 UGAUAAUGCCGCUUGAUCUGCACUUGAUCCCCAGUGGAUUAGUGCGGCUGUAAUAUUAAAUUGCCUUGUGGUUGUUUUAAUAACAAUA----------------- .......(((((((((((..(............)..)))))).)))))(((..(((((((..(((....)))...))))))))))...----------------- ( -24.80) >DroPse_CAF1 54158 82 - 1 UGAUAAUGCCGCUUGAUCUCCACUUGAUCCCCAGUGGAUUAGUGCGGCUGUAAUAUUAAAUCCAUUUGCGGUUGUCCCCACA----------------------- .(((((((((((((((..((((((.(....).)))))))))).)))))(((((............)))))))))))......----------------------- ( -22.50) >DroGri_CAF1 64425 88 - 1 UGAUAAUGCCGCUUGAUCUGCACUUGAUCCCUAGUGGAUUAGUGCGGCUGUAAUAUUAAAUUGCCUUGCGGUUGUUUUAAUAACAAUA----------------- .......(((((..(..(((((((.(((((.....))))))))))))..(((((.....))))))..)))))((((.....))))...----------------- ( -25.00) >DroAna_CAF1 53399 104 - 1 UGAUAAUGCCGCUUGAUCUCCACUUGAUCCCCAGUGGAUUAGUGCGGCUGUAAUAUUAAAUCCAUUUGCGGUUGUUC-AACAAUAAUACAAUAAUAACGGCAGCA (((((..(((((((((..((((((.(....).)))))))))).))))).....))))).......((((.((((((.-..............)))))).)))).. ( -25.26) >DroPer_CAF1 52273 82 - 1 UGAUAAUGCCGCUUGAUCUCCACUUGAUCCCCAGUGGAUUAGUGCGGCUGUAAUAUUAAAUCCAUUUGCGGUUGUCCCCACA----------------------- .(((((((((((((((..((((((.(....).)))))))))).)))))(((((............)))))))))))......----------------------- ( -22.50) >consensus UGAUAAUGCCGCUUGAUCUCCACUUGAUCCCCAGUGGAUUAGUGCGGCUGUAAUAUUAAAUCCAUUUGCGGUUGUUC_AACAACAAUA_________________ .(((((((((((((((((..((((.(....).)))))))))).)))))(((((............)))))))))))............................. (-19.08 = -18.72 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:24 2006