| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,737,609 – 26,737,707 |
| Length | 98 |
| Max. P | 0.846770 |
| Location | 26,737,609 – 26,737,707 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 75.77 |
| Mean single sequence MFE | -16.69 |
| Consensus MFE | -10.85 |
| Energy contribution | -10.35 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.846770 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26737609 98 + 27905053 GAGGAUAAAACC-----UA----AGGG-----AAAGGCAGGCAAAUGCGAAAUAAAAACGAAAAUUAUGAACUGCACAAAAGCUGUUGUGAAUAUUAAUAAAUUCUGCCU--GC .(((......))-----).----....-----..((((((((....))................((((......(((((......))))).......))))...))))))--.. ( -17.62) >DroVir_CAF1 52837 105 + 1 AAAAAUCAAAAA-----AAAAAA----AAAAGUUCGGCAGGCAAAUGCGAAAUAAAAACGAAAAUUAUGAACUGCACAAAAGCUGUUGUGAAUUUUAAUAAAUUUUGUUUGUGU ............-----......----.....((((.((......))))))....((((((((.((((......(((((......))))).......)))).)))))))).... ( -14.62) >DroPse_CAF1 50245 79 + 1 ---------------------------------GAGGCAGGCAAAUGCGAAAUAAAAACGAAAAUUAUGAACUGCACAAAAGCUGUUGUGAAUUUUAAUAAAUUUUGUUU--CU ---------------------------------...(((......)))(((((((((...((((((...(((.((......)).)))...))))))......))))))))--). ( -14.10) >DroYak_CAF1 42222 98 + 1 AAGGAUAAAACG-----AA----CGGG-----AAAGGCAGGCAAAUGCGAAAUAAAAACGAAAAUUAUGAACUGCACAAAAGCUGUUGUGAAUUUUAAUAAAUUCUGCCU--GC ............-----..----....-----....(((((((..........................(((.((......)).)))..((((((....)))))))))))--)) ( -17.60) >DroAna_CAF1 49835 103 + 1 GCGCACAAGACAAGAGUGC----UGGU-----AAGGGCUAGCAAAUGCGAAAUAAAAACGAAAAUUAUGAACUGCACAAAAGCUGUUGUGAAUUUUAAUAAAUUUUGCUG--CC ..(((...........(((----((((-----....)))))))...(((((((.......((((((...(((.((......)).)))...)))))).....)))))))))--). ( -21.60) >DroPer_CAF1 48386 79 + 1 ---------------------------------GAGGCAGGCAAAUGCGAAAUAAAAACGAAAAUUAUGAACUGCACAAAAGCUGUUGUGAAUUUUAAUAAAUUUUGUUU--CG ---------------------------------...(((......)))(((((((((...((((((...(((.((......)).)))...))))))......))))))))--). ( -14.60) >consensus _AG_AUAAAAC_______A_____________AAAGGCAGGCAAAUGCGAAAUAAAAACGAAAAUUAUGAACUGCACAAAAGCUGUUGUGAAUUUUAAUAAAUUUUGCUU__CC ...................................(((((((....))............((((((...(((.((......)).)))...))))))........)))))..... (-10.85 = -10.35 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:23 2006