Locus 9984

Sequence ID 3R_DroMel_CAF1
Location 26,735,611 – 26,735,715
Length 104
Max. P 0.961376
window15914

overview

Window 4

Location 26,735,611 – 26,735,715
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 95.19
Mean single sequence MFE -20.86
Consensus MFE -18.29
Energy contribution -18.73
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -1.71
Structure conservation index 0.88
SVM decision value 1.53
SVM RNA-class probability 0.961376
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26735611 104 + 27905053
UGGCAAUGUCAACAAGGACAUGCCACGCAAACUAAUACACAAAACCUACACACAAACGCACUUUUUUGGAGGAUGGGUAAACCCUUGCCAUGCUUACACAAAAA
(((((.((((......))))))))).(((.......................((((........))))..((..(((....)))...)).)))........... ( -21.80)
>DroSec_CAF1 39604 104 + 1
UGGCAAUGUCAACAAGGACAUGCCACGCAAACUAAUACACAAAACCUACACACUGACGCACUUUUUUGGAGGAUGGGAAAACCCUUGCCAUGCUUACACAAAAA
(((((.((((......))))))))).(((..........(((((...................)))))..((..(((....)))...)).)))........... ( -20.31)
>DroSim_CAF1 41589 104 + 1
UGGCAAUGUCAACAAGGACAUGCCACGCAAACUAAUACACAAAACCUACACACUGACGCACUUUUUUGGAGGAUGGGAAAACCCUUGCCAUGCUUACACAAAAA
(((((.((((......))))))))).(((..........(((((...................)))))..((..(((....)))...)).)))........... ( -20.31)
>DroEre_CAF1 40637 104 + 1
UGGCAAUGUCAACAAGGACAUGCCACGCAAACUAAUACACAAAACCCACACACUGACGCACUUUUUUGGAGGAUGGGAAAACCCUUGCCAUGCGUACACAAAAA
.((((.((((......))))))))(((((................(((..................))).((..(((....)))...)).)))))......... ( -23.77)
>DroYak_CAF1 40129 104 + 1
UGGCAAUGUCAACAAGGACAUGCCACGCAAACUAAUACACAGAACACACACACAAACGCACUUUUUCGGAGGAUGGGAAAACCCUUGCCACACUUACACAACAA
(((((.((((......))))))))).((((..............................((((....))))..(((....)))))))................ ( -18.10)
>consensus
UGGCAAUGUCAACAAGGACAUGCCACGCAAACUAAUACACAAAACCUACACACUGACGCACUUUUUUGGAGGAUGGGAAAACCCUUGCCAUGCUUACACAAAAA
(((((.((((......))))))))).(((..........(((((...................)))))..((..(((....)))...)).)))........... (-18.29 = -18.73 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:22 2006