Locus 9982

Sequence ID 3R_DroMel_CAF1
Location 26,729,900 – 26,729,992
Length 92
Max. P 0.541182
window15912

overview

Window 2

Location 26,729,900 – 26,729,992
Length 92
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 86.60
Mean single sequence MFE -33.52
Consensus MFE -24.34
Energy contribution -24.64
Covariance contribution 0.30
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.73
SVM decision value 0.02
SVM RNA-class probability 0.541182
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26729900 92 - 27905053
GCCUGUGGCACGUGACAGUGGCGUUGG---CAAGUGCACCACCCAACCAGCAGCCAGCCAUUGCCAUCCAUCGCCGA--CCGGCACGUGUCCUUGCU
((..(.(((((((((..((((((.(((---(..((((............))).)..)))).))))))...))(((..--..)))))))))))..)). ( -34.10)
>DroSec_CAF1 33958 92 - 1
GCCUGUGGCACGUGACAGUGGCGUUGG---CAAGUGCACCACCCAACCAGCAGCCAUCCAUCGCCAUCCAUCGCCGC--CCGGCACGUGUCCUUGCU
((..(.(((((((((..((((((.(((---(...(((............))))))).....))))))...))(((..--..)))))))))))..)). ( -32.60)
>DroSim_CAF1 35913 92 - 1
GCCUGUGGCACGUGACAGUGGCGUUGG---CAAGUGCACCACCCAAACAGCAGCCAGCCAUCGCCAUCCAUCGCCGC--CCGGCACGUGUCCUUGCU
((..(.(((((((((..((((((.(((---(..((((............))).)..)))).))))))...))(((..--..)))))))))))..)). ( -35.80)
>DroEre_CAF1 34801 73 - 1
GCCUGUGGCACGUGACAGUGGCGUUGG---CAAGUGCACCACCCAACCAGCAGCCAAC---------------------CCGGCACGUGUCCUUGCU
((..(.((((((((....(((.(((((---(...(((............)))))))))---------------------))).)))))))))..)). ( -28.40)
>DroYak_CAF1 34152 97 - 1
GCCUGUGGCACGUGACAGUGGCGUUGGCAGCAAGUGCACCACCCAACCAGCAGCCACCCAACGCCAUCCAUCGCCAACGCCGACACGUGUCCUUGCU
((..(.((((((((....((((((((((.((....))...............((........))........)))))))))).)))))))))..)). ( -36.70)
>consensus
GCCUGUGGCACGUGACAGUGGCGUUGG___CAAGUGCACCACCCAACCAGCAGCCAGCCAUCGCCAUCCAUCGCCGA__CCGGCACGUGUCCUUGCU
((..(.((((((((.(..(((((((((......(((...)))....))))).))))......((........)).......).)))))))))..)). (-24.34 = -24.64 +   0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:20 2006