Locus 9981

Sequence ID 3R_DroMel_CAF1
Location 26,723,563 – 26,723,658
Length 95
Max. P 0.626991
window15911

overview

Window 1

Location 26,723,563 – 26,723,658
Length 95
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 79.85
Mean single sequence MFE -21.58
Consensus MFE -18.01
Energy contribution -16.68
Covariance contribution -1.33
Combinations/Pair 1.40
Mean z-score -1.13
Structure conservation index 0.83
SVM decision value 0.19
SVM RNA-class probability 0.626991
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26723563 95 - 27905053
AAGACUGCGCUCUGCUCAUUGAAAACGUCGAUGAAAUCGUCCAAGAUUUUGAAGUGGAAGGCAGGUGUGAGGAUCUGUGGU-GUAGGUUAAAUUUA
....((((((((..((((((((.....))))))(((((......)))))...))..))..((((((......)))))).))-)))).......... ( -24.30)
>DroVir_CAF1 38987 96 - 1
AAGACGGCGCUUUGCUCGUUGAAAACAUCAAUAAAAUCAUCCAAUAUUUUAAAAUGAAAGGCGGGUGUCAAAAUCUGCAAAAGCCAAUUAGAUAUA
.....(((..(((((..(((((.....))))).....(((((....((((.....))))...))))).........))))).)))........... ( -17.90)
>DroEre_CAF1 26973 95 - 1
AAGACUGCGCUCUGCUCAUUGAAAACGUCGAUGAAGUCGUCCAAGAUUUUGAAGUGGAAGGCAGGCGUGAGGAUCUGGAGU-UGAAAUUCAAUUAA
.(((((((((.(((((((((((.....))))))).....((((...........))))..))))))))..)).)))..(((-((.....))))).. ( -23.60)
>DroYak_CAF1 27391 95 - 1
AAGACUGCGCUCUGCUCAUUGAAGACGUCAAUGAAGUCGUCCAAGAUUUUGAAGUGGAACGCAGGCGUCAGAAUCUGUGAA-UUAAGUUUUAAAAA
.(((((((((.(((((((((((.....))))))).....((((...........))))..))))))).)))..))).....-.............. ( -23.40)
>DroMoj_CAF1 30373 96 - 1
AAGACGGCGCUUUGCUCGUUGAAAACAUCAAUGAAAUCAUCCAAGAUUUUGAAAUGAAAGGCGGGCGUCAGAAUCUGCAGUUGUGAAUUAAAUAUA
.......(((.(((((((((((.....))))))).........(((((((((..((.....))....)))))))))))))..)))........... ( -19.90)
>DroAna_CAF1 30194 93 - 1
AAAACAGCGCUCUGCUCAUUGAAGACGUCAAUGAAGUCGUCCAAGAUUUUGAAGUGGAAUGCAGGUGUUAGAAUCUGCAAU-U--AAUUAAAGAAA
..........((..((((((((.....))))))(((((......)))))...))..)).(((((((......)))))))..-.--........... ( -20.40)
>consensus
AAGACUGCGCUCUGCUCAUUGAAAACGUCAAUGAAAUCGUCCAAGAUUUUGAAGUGGAAGGCAGGCGUCAGAAUCUGCAAU_GUAAAUUAAAUAAA
.....(((((.(((((((((((.....)))))))((((......))))............)))))))))........................... (-18.01 = -16.68 +  -1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:19 2006