Locus 9978

Sequence ID 3R_DroMel_CAF1
Location 26,698,279 – 26,698,375
Length 96
Max. P 0.500000
window15907

overview

Window 7

Location 26,698,279 – 26,698,375
Length 96
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 77.38
Mean single sequence MFE -22.97
Consensus MFE -12.81
Energy contribution -13.28
Covariance contribution 0.47
Combinations/Pair 1.15
Mean z-score -1.56
Structure conservation index 0.56
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26698279 96 + 27905053
--CAAAGUGAGGCAUUAUUUGCAUUUCCACUAGGAAAUAGAGCGCCAACUUAUCGGAUGGGGCAGGGGGCAUAAAUAAAAUGUUUCUUUAUGGCCGUA
--........(((.........((((((....))))))...((.(((.((....)).))).))(((..((((.......))))..)))....)))... ( -24.60)
>DroPse_CAF1 6378 85 + 1
--GAAACUGAGGCAUCAUUUGCAUUUCCAGUAGGAAAUAGAGCGC-----------AUGCGCAGAGGGGCAUAAAUAAAAUGUUUCUUUAUGGCUGCA
--.........(((((((....((((((....))))))...(((.-----------...)))((((..((((.......))))..)))))))).))). ( -22.10)
>DroWil_CAF1 1585 85 + 1
ACUUAGCCAAGAAAUCAUUUGCAUUUCCAGUAGGAAAUAGAGCGCAAGC------------GCAAGAGGCAUAAAUAAAAUGUU-GUUUAUGAACGUA
.....(((..(....).(((((((((((....))))))...((....))------------))))).)))((((((((....))-))))))....... ( -21.90)
>DroYak_CAF1 1594 96 + 1
--CAAAGUGAGGCAUCAUUUGCAUUUCCACUAGGAAAUAGAGCGCCAACCUAUCGCAUGGGGCAGGGGGCAUAAAUAAAAUGUUUCUUUAUGGCCGUA
--..((((((....))))))((((((((....))))))...))((((.(((((...)))))..(((..((((.......))))..)))..)))).... ( -24.70)
>DroAna_CAF1 1894 91 + 1
AUGAAACUGAGGCAUCAUUUGCAUUUCCAGUAGGAAAUAGAGCGA------AUGCGAAGGGGUAGG-GGCUCAAAUAAAAUGUUUCUUUAUGGCCGUA
..........(((..(((((((((((((....))))))...))))------))).......(((((-((..((.......))..))))))).)))... ( -20.90)
>DroPer_CAF1 6423 85 + 1
--GUAACUGAGGCAUCAUUUGCAUUUCCAGUAGGAAAUAGAGCGC-----------AUGCGCAGAGGGGCAUAAAUAAAAUGUUUCUUUAUGGCUGCA
--((((.(((....))).))))((((((....)))))).....((-----------(.((.(((((..((((.......))))..)))..))))))). ( -23.60)
>consensus
__GAAACUGAGGCAUCAUUUGCAUUUCCAGUAGGAAAUAGAGCGC___________AUGGGGCAAGGGGCAUAAAUAAAAUGUUUCUUUAUGGCCGUA
..........(((.......((((((((....))))))...))....................(((((((((.......)))))))))....)))... (-12.81 = -13.28 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:15 2006