Locus 9976

Sequence ID 3R_DroMel_CAF1
Location 26,695,317 – 26,695,417
Length 100
Max. P 0.626780
window15904

overview

Window 4

Location 26,695,317 – 26,695,417
Length 100
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 92.05
Mean single sequence MFE -23.05
Consensus MFE -18.96
Energy contribution -18.40
Covariance contribution -0.56
Combinations/Pair 1.21
Mean z-score -1.59
Structure conservation index 0.82
SVM decision value 0.19
SVM RNA-class probability 0.626780
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26695317 100 - 27905053
AGUUGUAAACUAUAACACACAUAUGCUGAGAACUCAGCAGGUGAGAGGAAAUAGCAAAUUAGCUGGCGGCAUUCUUGCGUUCGAUGGUGCAUAAAAUAUG
..((((..(((((...((.....((((((....)))))).(..((((....((((......))))......))))..)))...)))))..))))...... ( -24.70)
>DroSec_CAF1 1686 97 - 1
AGUUGUAAAUAAUAACACACAUAUGCUGAGAACUCAACAGGUGAGAGGAAAUAGCAAAUUAGCUG---UCAUUCUUGCGUUCGAUGGUGCAUAAAAUAUG
.(((((.....))))).....(((((...((((.(....)(..((((...(((((......))))---)..))))..)))))......)))))....... ( -20.50)
>DroEre_CAF1 1690 97 - 1
AGUUGUAAAUUAUAAGACACAUAUGUUGAGAACUCAACAGGUGAGAGGAAAUGGCAAAUUAGCUG---GCAUUCUUGCGUUCGAUUGUGCAUAAAAUAUU
...((((....((..(((.....((((((....)))))).(..((((....((((......))))---...))))..))))..))..))))......... ( -20.00)
>DroYak_CAF1 1701 97 - 1
AGUUGCAAAUUAUAGCACACAUAUGUUGAGAACUCAACAGGUGAGAGGAAAUGGCAAAUUAGCUG---GCAUUCUCGCGUUCGAUGGUGCAUAAAAUAUG
.........((((.((((.(((.((((((....)))))).(((((((....((((......))))---...))))))).....)))))))))))...... ( -27.00)
>consensus
AGUUGUAAAUUAUAACACACAUAUGCUGAGAACUCAACAGGUGAGAGGAAAUAGCAAAUUAGCUG___GCAUUCUUGCGUUCGAUGGUGCAUAAAAUAUG
...((((......(((.......((((((....)))))).(((((((....((((......))))......))))))))))......))))......... (-18.96 = -18.40 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:13 2006