Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 26,689,800 – 26,689,918 |
Length | 118 |
Max. P | 0.790215 |
Location | 26,689,800 – 26,689,918 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.72 |
Mean single sequence MFE | -29.87 |
Consensus MFE | -28.60 |
Energy contribution | -28.84 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.21 |
Structure conservation index | 0.96 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.790215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26689800 118 + 27905053 CGCAGACAGCCGAACCCAGUAAUCAGGCCCCCGAAAUGCGGAAGUCUGCGAAUGCAUUGCGAAAACCGCUACGCAUGCGAAAAACUCGUUUUCCACCGCCCUCUUCG--UCAUCUUCCCC (((((((.(((..............)))..(((.....)))..))))))).((((...(((.....)))...))))(((((.....((........)).....))))--).......... ( -28.94) >DroSec_CAF1 280548 116 + 1 CGCAGACAGCCGAACCCAGUAAUCAGGCCCCCGAAAUGCGGAAGUCUGCGAAUGCAUUGCGAAAACCGCUACGCAUGCGAAAAACUCGUUUUCCACCGCCCUCUUCGCU----CCCCCCC (((((((.(((..............)))..(((.....)))..))))))).((((...(((.....)))...))))(((((.....((........)).....))))).----....... ( -31.24) >DroSim_CAF1 277303 120 + 1 CGCAGACAGCCGAACCCAGUAAUCAGGCCCCCGAAAUGCGGAAGUCUGCGAAUGCAUUGCGAAAACCGCUACGCAUGCGAAAAACUCGUUUUCCACCGCCCUCUUCGCUUCACCCCCACC (((((((.(((..............)))..(((.....)))..))))))).((((...(((.....)))...))))(((((.....((........)).....)))))............ ( -31.24) >DroEre_CAF1 296528 113 + 1 CGCAGACCGCCGAACCCAAUAAUCUGGCCCCCGAAAUGCGGAAGUCUGCGAAUGCAUUGCGAAAACCGCUACGCAUGCGAAAAACUCGUUUUCCACCGCCCUCUUCGCU-------CCCC (((((((.((((............))))..(((.....)))..))))))).((((...(((.....)))...))))(((((.....((........)).....))))).-------.... ( -30.30) >DroYak_CAF1 285599 120 + 1 CGCAGACAGCCAAACCCAAUAAUCAGGCCCCCGAAAUGCGGAAGUCUGCGAAUGCAUUGCGAAAACCGCUACGCAUGCGAAAAACUCGUUUUCCACCGCCUCCUCUGCUUCCACUUCCCU (((((((.(((..............)))..(((.....)))..))))))).((((...(((.....)))...))))((((.....))))............................... ( -27.64) >consensus CGCAGACAGCCGAACCCAGUAAUCAGGCCCCCGAAAUGCGGAAGUCUGCGAAUGCAUUGCGAAAACCGCUACGCAUGCGAAAAACUCGUUUUCCACCGCCCUCUUCGCUUC__CCCCCCC (((((((.(((..............)))..(((.....)))..))))))).((((...(((.....)))...))))(((((.....((........)).....)))))............ (-28.60 = -28.84 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:04 2006