| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,688,764 – 26,688,855 |
| Length | 91 |
| Max. P | 0.664835 |
| Location | 26,688,764 – 26,688,855 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 97.25 |
| Mean single sequence MFE | -20.75 |
| Consensus MFE | -20.36 |
| Energy contribution | -20.30 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.664835 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26688764 91 + 27905053 UAUUUGUUUUUUAUUUGAGGCUGUGUGCUGUUUGUUUAUUGGCUGUCAAAUUCUUGCACUUUGACGUUUGACAUUGUCCCACAAAUGGCGC .....(((((......)))))...(((((((((((.....(((((((((((((.........)).))))))))..)))..))))))))))) ( -21.20) >DroSec_CAF1 279511 91 + 1 UAUUUGUUUUUUAUUUGAGGCUGUGGGCUGUUUGUUUAUUGGCUGUCAAAUUCUUGCACUUUGACGUUUGACAUUGUCCCACAAACGGCGC .....(((((......))))).....(((((((((.....(((((((((((((.........)).))))))))..)))..))))))))).. ( -21.50) >DroSim_CAF1 276286 91 + 1 UAUUUGUUUUUUAUUUGAGGCUGUGUGCUGUUUGUUUAUUGGCUGUCAAAUUCUUGCACUUUGACGUUUGACAUUGUCCCACAAAUGGCGC .....(((((......)))))...(((((((((((.....(((((((((((((.........)).))))))))..)))..))))))))))) ( -21.20) >DroEre_CAF1 295460 91 + 1 UAUUUGCUUUUUAUUUCAGGCUGUGUGCUGUUUGUUUAUUGGCUGUCAAAUUCUUGCACUUUGACGUUUGACAUUGUCCCACAAAUGGUGC .....((((........))))...(..((((((((.....(((((((((((((.........)).))))))))..)))..))))))))..) ( -19.10) >consensus UAUUUGUUUUUUAUUUGAGGCUGUGUGCUGUUUGUUUAUUGGCUGUCAAAUUCUUGCACUUUGACGUUUGACAUUGUCCCACAAAUGGCGC .....(((((......)))))...(((((((((((.....(((((((((((((.........)).))))))))..)))..))))))))))) (-20.36 = -20.30 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:46:03 2006