Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,181,950 – 3,182,060 |
Length | 110 |
Max. P | 0.998265 |
Location | 3,181,950 – 3,182,060 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 93.45 |
Mean single sequence MFE | -24.38 |
Consensus MFE | -20.44 |
Energy contribution | -21.12 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.08 |
Mean z-score | -2.75 |
Structure conservation index | 0.84 |
SVM decision value | 3.05 |
SVM RNA-class probability | 0.998265 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3181950 110 + 27905053 AGAAAAAACACAUUCAUAUACGUAAGAGAAUUGGGUCAAGCGGAAAAAAUCAUUUCCGUUUUAGCCAACCGAAAAGGGUGCCCAAAACAGAUGUGACAAAAUUAUGCAAC ........((((((......(....)....((((((.(((((((((......)))))))))......(((......)))))))))....))))))............... ( -24.70) >DroSec_CAF1 1433 110 + 1 AGAAAAAACACAUUCAAAUACGUAAGAGAAUUGGGUCAAGCGGAAAAAAUCAUUUCCGUUUUAGCCAACCGAAAAGGGUCCCCAAAACAGAUGGGACAAAAUUAUGCAAC ....................(((((.....((((.(.(((((((((......))))))))).).))))((.....))(((((..........)))))....))))).... ( -25.10) >DroSim_CAF1 7394 110 + 1 AGAAAAAACACAUUCAUAUACGUAAGAGAAUUGGGUCAAGCGGAAAAAAUCAUUUCCGUUUUAGCCAACCGAAAAGGGUGCCCAAAACAGAUGGCACAAAAUUAUGCAAC ....................(((((.....((((.(.(((((((((......))))))))).).))))((.....))(((((..........)))))....))))).... ( -24.90) >DroEre_CAF1 2332 109 + 1 AGGA-AAAUACAUUCAUAUACGCAAGAGAAUUGGGUCAAGCGGAAAAAAUCAUUUCCGUUUUAGCCAACCGAAAAGGGUGCCCAAAACAGAUGGCACAAAAUUAUGCACC ....-................(((......((((.(.(((((((((......))))))))).).))))((.....))(((((..........))))).......)))... ( -26.50) >DroYak_CAF1 7170 110 + 1 AGAAAAAAUACAUUCAUAUAUGUAAAAGAAUAGGGUCAAGCGGAAAAAAUUAUUUCCGUAUAAGCCAACCGAAAAGGGUGCCCAAAACAUAUGGGACAAUAUUAUGCAAC ........(((((......))))).........(((...(((((((......)))))))....)))..((.....))((.((((.......))))))............. ( -20.70) >consensus AGAAAAAACACAUUCAUAUACGUAAGAGAAUUGGGUCAAGCGGAAAAAAUCAUUUCCGUUUUAGCCAACCGAAAAGGGUGCCCAAAACAGAUGGGACAAAAUUAUGCAAC .....................(((......((((.(.(((((((((......))))))))).).))))((.....))(((((..........))))).......)))... (-20.44 = -21.12 + 0.68)
Location | 3,181,950 – 3,182,060 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 93.45 |
Mean single sequence MFE | -23.29 |
Consensus MFE | -18.86 |
Energy contribution | -18.90 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.13 |
Mean z-score | -1.46 |
Structure conservation index | 0.81 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624093 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3181950 110 - 27905053 GUUGCAUAAUUUUGUCACAUCUGUUUUGGGCACCCUUUUCGGUUGGCUAAAACGGAAAUGAUUUUUUCCGCUUGACCCAAUUCUCUUACGUAUAUGAAUGUGUUUUUUCU ...((........((((..((((((((((.((.((.....)).)).))))))))))..)))).......))...............(((((......)))))........ ( -22.06) >DroSec_CAF1 1433 110 - 1 GUUGCAUAAUUUUGUCCCAUCUGUUUUGGGGACCCUUUUCGGUUGGCUAAAACGGAAAUGAUUUUUUCCGCUUGACCCAAUUCUCUUACGUAUUUGAAUGUGUUUUUUCU ...(((((.....(((((..........))))).......((((((...((.((((((......)))))).))...))))))................)))))....... ( -21.60) >DroSim_CAF1 7394 110 - 1 GUUGCAUAAUUUUGUGCCAUCUGUUUUGGGCACCCUUUUCGGUUGGCUAAAACGGAAAUGAUUUUUUCCGCUUGACCCAAUUCUCUUACGUAUAUGAAUGUGUUUUUUCU ...(((((.((.(((((.....(((((((.((.((.....)).)).)))))))(((((......)))))....................))))).)).)))))....... ( -24.20) >DroEre_CAF1 2332 109 - 1 GGUGCAUAAUUUUGUGCCAUCUGUUUUGGGCACCCUUUUCGGUUGGCUAAAACGGAAAUGAUUUUUUCCGCUUGACCCAAUUCUCUUGCGUAUAUGAAUGUAUUU-UCCU ((..((......))..)).((((((((((.((.((.....)).)).))))))))))....((((....(((..((........))..))).....))))......-.... ( -28.60) >DroYak_CAF1 7170 110 - 1 GUUGCAUAAUAUUGUCCCAUAUGUUUUGGGCACCCUUUUCGGUUGGCUUAUACGGAAAUAAUUUUUUCCGCUUGACCCUAUUCUUUUACAUAUAUGAAUGUAUUUUUUCU ..(((((.(((((((((((.......)))).(((......))).((.(((..((((((......))))))..))).)).........))).))))..)))))........ ( -20.00) >consensus GUUGCAUAAUUUUGUCCCAUCUGUUUUGGGCACCCUUUUCGGUUGGCUAAAACGGAAAUGAUUUUUUCCGCUUGACCCAAUUCUCUUACGUAUAUGAAUGUGUUUUUUCU ...((.................(((((((.((.((.....)).)).)))))))(((((......)))))))...............(((((......)))))........ (-18.86 = -18.90 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:57 2006