Locus 9964

Sequence ID 3R_DroMel_CAF1
Location 26,685,301 – 26,685,421
Length 120
Max. P 0.805933
window15881

overview

Window 1

Location 26,685,301 – 26,685,421
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.75
Mean single sequence MFE -26.71
Consensus MFE -23.70
Energy contribution -23.86
Covariance contribution 0.16
Combinations/Pair 1.03
Mean z-score -1.35
Structure conservation index 0.89
SVM decision value 0.63
SVM RNA-class probability 0.805933
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26685301 120 - 27905053
UCGAUAAAAAGCGAAAAAUCACCAGAGUAAAAACGAAAUUGAAGUUGAUUUUGUUGCUGUUGCCGUCGACAGCUGGCGAUAAAACAAAAUGUGGACAACCAUUUAAUAUUUUGACCACCA
(((........)))...(((.(((.......(((((((((......)))))))))(((((((....)))))))))).)))....((((((((((....)))).....))))))....... ( -25.60)
>DroSec_CAF1 276066 119 - 1
UCGAUAAAAAGCGAA-AAUCACCAGACUAAAAACGAAAUUGAAGUUGAUUUUGUUGCUGUUCCCGUCGACAGCUGGCGAUAAAACAAAAUGUGGACAACCAUUUGAUAUUUGGGCCACCA
(((........))).-.(((.(((.......(((((((((......)))))))))((((((......))))))))).)))..........((((....(((.........))).)))).. ( -26.60)
>DroSim_CAF1 272813 119 - 1
UCGAUAAAAAGCGAA-AAUCACCAGACUAAAAACGAAAUUGAAGUUGAUUUUGUUGCUGUUCCCGUCGACAGCUGGCGAUAAAACAAAAUGUGGACAACCAUUUGAUAUUUGGGCCACCA
(((........))).-.(((.(((.......(((((((((......)))))))))((((((......))))))))).)))..........((((....(((.........))).)))).. ( -26.60)
>DroEre_CAF1 292008 120 - 1
UCGAUAAAAAGCGAAAAAUCACCAGAGUAAAAACGAAAUUGAAGUUGAUUUUGUUGCUGUUGCUGUCGACAGCUGGCGAUAAAACAAAAUGUGGACAACCAUCCAAUGUUUGGGCUACCA
.........(((.....(((.(((.......(((((((((......)))))))))(((((((....)))))))))).)))....((((...((((......))))...)))).))).... ( -30.10)
>DroYak_CAF1 280987 120 - 1
UCGAUAAAAAGCGAAAAAUCAGCAGAGUAAAAACGAAAUUGAAGUUGAUUUUGUUGCUGUUGCCGUCGACAGCUGGCGAUAAAACAAAAUGUGGACAACCAUCAGAUAUUUGGGCUACCA
.........((((((((((((((....................))))))))).)))))(((((((.(....).)))))))..........((((....(((.........))).)))).. ( -24.65)
>consensus
UCGAUAAAAAGCGAAAAAUCACCAGAGUAAAAACGAAAUUGAAGUUGAUUUUGUUGCUGUUGCCGUCGACAGCUGGCGAUAAAACAAAAUGUGGACAACCAUUUGAUAUUUGGGCCACCA
(((........)))...(((.(((.......(((((((((......)))))))))((((((......))))))))).)))..........((((....(((.........))).)))).. (-23.70 = -23.86 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:52 2006